PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10003042m
Common NameCARUB_v10003042mg, CARUB_v10003050mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 188aa    MW: 21190 Da    PI: 6.5272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10003042mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-18655255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     +++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a++ ++g
  Carubv10003042m  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAALLMNG 55
                     89****999.**********8.....334**********************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-32564IPR001471AP2/ERF domain
CDDcd000187.68E-23665No hitNo description
PfamPF008471.2E-11655IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-20664IPR016177DNA-binding domain
SMARTSM003803.0E-39669IPR001471AP2/ERF domain
PROSITE profilePS5103222.221663IPR001471AP2/ERF domain
PRINTSPR003672.8E-10718IPR001471AP2/ERF domain
PRINTSPR003672.8E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MVHSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA LLMNGQNAKT  60
NFPVVKSEEG SDHVKDVNST LMSPKSLSEL LNAKLRKSCK DLTPSLTCLR LDTDSSHIGV  120
WQKRAGSKTS PTWVMRLELG TVANESAVDL GMNTKKQTVE KEEEEEETIS DEDQLAMEMI  180
EELLNWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-166631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10003042m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608650.0AY560865.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g11190) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289508.11e-136ethylene-responsive transcription factor SHINE 2
RefseqXP_006289513.11e-136ethylene-responsive transcription factor SHINE 2
SwissprotQ9LFN71e-112SHN2_ARATH; Ethylene-responsive transcription factor SHINE 2
TrEMBLR0FJW31e-135R0FJW3_9BRAS; Uncharacterized protein
STRINGXP_006289508.11e-136(Capsella rubella)
STRINGXP_006289513.11e-136(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.11e-108ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Liu Y, et al.
    Functional Characterization of Populus PsnSHN2 in Coordinated Regulation of Secondary Wall Components in Tobacco.
    Sci Rep, 2017. 7(1): p. 42
    [PMID:28246387]
  3. Kumar V, et al.
    A part of the upstream promoter region of SHN2 gene directs trichome specific expression in Arabidopsis thaliana and heterologous plants.
    Plant Sci., 2017. 264: p. 138-148
    [PMID:28969794]