PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10002949m | ||||||||
Common Name | CARUB_v10002949mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 334aa MW: 37271.4 Da PI: 8.52 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.8e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l d+++++G+g +W + + + g++R++k+c++rw++yl Carubv10002949m 14 RGPWSPEEDSKLRDYIEKYGNGgNWISLPLKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 41 | 4.5e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ +++ G++ W+ Ia++++ gRt++++k++w++ Carubv10002949m 69 GDFSEEEDMIIFSLFAAIGSR-WSIIAAHLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.911 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.37E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.28E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.175 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.86E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE KYGNGGNWIS LPLKAGLRRC GKSCRLRWLN 60 YLRPNIKHGD FSEEEDMIIF SLFAAIGSRW SIIAAHLPGR TDNDIKNYWN TKLRKKLLSS 120 SSSSSSSHSS SAMASPYLNP NSQDVKRSLT PSVTIPSSSY NPYAENPNQD PTKYLISNIN 180 GFEADDKQIF PYSNLNYPQD LSLSDSNNNI SGASGFLLNH NMCDHYNNHT SFSSDVNGKR 240 SETMIKQEEM MMMMMIDHHI DQRTKGYNGD STQGYYNYYN GHGDLKQMIS GTGTNSNINM 300 GGSGSSSSSI SNLAENKSSS SLLQHKCLPY FYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10002949m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By a shift from short days to long days, in the axils of primordia on the elongating stem. {ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175507 | 0.0 | AK175507.1 Arabidopsis thaliana mRNA for myb like transcription factor (MYB37), complete cds, clone: RAFL21-93-G12. | |||
GenBank | AY519628 | 0.0 | AY519628.1 Arabidopsis thaliana MYB transcription factor (At5g23000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286724.1 | 0.0 | transcription factor RAX1 | ||||
Swissprot | Q9FG68 | 0.0 | RAX1_ARATH; Transcription factor RAX1 | ||||
TrEMBL | R0FC29 | 0.0 | R0FC29_9BRAS; Uncharacterized protein | ||||
STRING | XP_006286724.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14013 | 16 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23000.1 | 1e-161 | myb domain protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10002949m |
Entrez Gene | 17884322 |
Publications ? help Back to Top | |||
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