PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002724m
Common NameCARUB_v10002724mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 371aa    MW: 42852.6 Da    PI: 8.5202
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002724mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000656083123
                     EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                     ++C+ Cgk F+    + +H+ + H
  Carubv10002724m 60 FRCEECGKGFRYEKCFSNHLAVmH 83
                     89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-75982No hitNo description
SMARTSM003550.046083IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3856088IPR007087Zinc finger, C2H2
PROSITE patternPS0002806283IPR007087Zinc finger, C2H2
SuperFamilySSF576672.74E-7295322No hitNo description
PfamPF139121.9E-7300322IPR007087Zinc finger, C2H2
SMARTSM003550.16300322IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556300327IPR007087Zinc finger, C2H2
PROSITE patternPS000280302322IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEEEHQDLDK PIYGALRHLK ITQSREEKEE STNQQRHYSL RENPKKKIQK SPEPMKKTLF  60
RCEECGKGFR YEKCFSNHLA VMHSSTNQKV YEESMMSLCC SFSRVRKKKR SSLMRYKKTS  120
LSESRSVFVA NDDELEVADC LILLSKSSPK VLYGLKLESE AVDVTPETPK GSYDLGCLRN  180
KKPRKGCEFE SGYFSNEQRL MEEGLSSYET LKEPGSFLSD DNRLDQQKER KVQRHLEEEV  240
TPPVRFKGPM SFLGEKHELD KLKHCKASDF ESGLYRTELG VRGMECTEMI AEPEKKNVEH  300
QCRLCNKVFS SYQALGGHQT FHRMNTSKNK KDCREESVEP EDESVRCSTT KRRRQASAAS  360
FQGVPARFML *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002724m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289258.10.0uncharacterized protein LOC17881681
TrEMBLR0FJ920.0R0FJ92_9BRAS; Uncharacterized protein
STRINGXP_006289258.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.11e-145C2H2 family protein