PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002723m
Common NameCARUB_v10002723mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 264aa    MW: 29614.1 Da    PI: 7.8376
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002723mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.1e-2091140255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a++k++g
  Carubv10002723m  91 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDEAALKFKG 140
                      7********.**********93....36************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-3390149IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-2291149IPR016177DNA-binding domain
PROSITE profilePS5103224.94891148IPR001471AP2/ERF domain
SMARTSM003804.7E-3791154IPR001471AP2/ERF domain
PfamPF008476.4E-1491140IPR001471AP2/ERF domain
CDDcd000181.42E-2091149No hitNo description
PRINTSPR003671.7E-1192103IPR001471AP2/ERF domain
PRINTSPR003671.7E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MANQRNYGKR PYRADESDEK KQGDDDENIF PFFSARSQYD MRAMVSALTQ VIGNQSSSHE  60
NNQHQPVLYN QQDPNQPIPP TQDQGVLRKR HYRGVRQRPW GKWAAEIRDP QKAARVWLGT  120
FETAEAAALA YDEAALKFKG SKAKLNFPER AQLASNTSTI TGPPNYYSSN NQIYYSNPQT  180
NPQSIPYYNQ YYYNQYLHQG GNSSNDALSY SLAGGETGGS MYNHQTLSTT TSSSSGGTSR  240
QPEEQDYARY LHFGDSSPPN SGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2690150162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator of the phytosulfokine PSK5 peptide hormone. Binds to the GCC-box pathogenesis-related promoter element. Rate-limiting factor of quiescent center cell division active when surrounding stem cells are damaged. Is a proteolytic target of APC/C-FZR1 complex. {ECO:0000269|PubMed:24158907}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00495DAPTransfer from AT5G07310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002723m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by brassinosteroid, but not regulated by ethylene. {ECO:0000269|PubMed:24158907}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545920.0AC254592.1 Capsella rubella clone CAP08-D18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289257.10.0ethylene-responsive transcription factor ERF115
SwissprotQ9LY291e-153EF115_ARATH; Ethylene-responsive transcription factor ERF115
TrEMBLR0HAX50.0R0HAX5_9BRAS; Uncharacterized protein
STRINGXP_006289257.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52921851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-135ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang Y, et al.
    Shade avoidance 6 encodes an Arabidopsis flap endonuclease required for maintenance of genome integrity and development.
    Nucleic Acids Res., 2016. 44(3): p. 1271-84
    [PMID:26721386]
  4. Zhang Y, et al.
    TOPOISOMERASE1α Acts through Two Distinct Mechanisms to Regulate Stele and Columella Stem Cell Maintenance.
    Plant Physiol., 2016. 171(1): p. 483-93
    [PMID:26969721]
  5. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]
  6. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]