PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002683m
Common NameCARUB_v10002683mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20363 Da    PI: 7.2908
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002683mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.35.5e-151563149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ie +  r vt+skR+ngi  K  ELSvLCd++va + +  +gk y++
  Carubv10002683m 15 KKIEREDDRLVTLSKRKNGIYTKLCELSVLCDVNVAFLGYTGSGKPYTF 63
                     67999999***************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.7E-21777IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-17766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.334767IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-14929IPR002100Transcription factor, MADS-box
PfamPF003193.1E-161663IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSSKKTKGRQ KMKIKKIERE DDRLVTLSKR KNGIYTKLCE LSVLCDVNVA FLGYTGSGKP  60
YTFGNPSFHA VVERFLNGET STSSSSLQQP VDSDNKAKIQ ELCKLYNNMM DGARAEEAKA  120
TEAAASVEPL SEDAWWKVPL EEVKDQEKIK HLLDRFEGLY EKLCYELAAR SERNDTAENN  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002683m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289227.11e-132agamous-like MADS-box protein AGL23
TrEMBLR0HAU91e-131R0HAU9_9BRAS; Uncharacterized protein
STRINGXP_006289227.11e-132(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.14e-65AGAMOUS-like 64