PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002559m
Common NameCARUB_v10002559mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 370aa    MW: 41675.8 Da    PI: 8.6435
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002559mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07212234123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C++Cgk F+r  nL+ H+r H
  Carubv10002559m 212 HYCQICGKGFKRDANLRMHMRAH 234
                      68*******************99 PP
2zf-C2H212.40.00047333348621
                      TTEEESSHHHHHHHHH CS
          zf-C2H2   6 CgksFsrksnLkrHir 21 
                      Cg++Fsrk+ L++H +
  Carubv10002559m 333 CGTRFSRKDKLMSHVS 348
                      **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.65E-6210237No hitNo description
SMARTSM003550.0028212234IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-6212239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632212239IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
SMARTSM00355160263296IPR015880Zinc finger, C2H2-like
SMARTSM0035573301323IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MMNQDDHLTS KGEGSMSSFS GTTATSSKQN YVNNTVTTAG VKSLEDDDAS LSLLYNLSTL  60
QDKVHQTQSL VSFYMISTNN INQSSGSTSL AVANIGSLVQ EIITAASSML FTCQQLNIGS  120
NNNNDNDQTA DHAMVLEFSR QETEPGHNFV QESTNLFGVQ ERGQISFPDQ NLEWFGTQTL  180
NPKKEYHRSK QRSGNYEILE LDVADLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKT  240
REALISPISQ DKKGDYSLKK HYYSCPQQGC RWNQRHEKFQ PLKSVICAKN HYKRSHCPKM  300
YMCRRCSVKH FSVLSDLRTH EKHCGDIKWV CSCGTRFSRK DKLMSHVSLF LGHVPAHGSS  360
APTTTIKRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002559m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052430.0AB005243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17.
GenBankAK2277400.0AK227740.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289136.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT240.0STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLR0GYR70.0R0GYR7_9BRAS; Uncharacterized protein
STRINGXP_006289136.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.10.0C2H2 family protein