PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10002555m

Common Name

CARUB_v10002555mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

M-type_MADS

Protein Properties

Length: 194aa MW: 21843.2 Da PI: 8.4787

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10002555m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.2	2.4e-09	1	23	20	42
HHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 20 ilKKAeELSvLCdaevaviifss 42 +lKKA EL +LCd+ ++v++ s+ Carubv10002555m 1 LLKKADELATLCDIPICVVVNSP 23 79******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	3.92E-12	1	68	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-7	1	24	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
LLKKADELAT LCDIPICVVV NSPYDAAPEV WPSRETANKI VAQWSKMSVM DKTKKMVNQE 60 TYLQQRIAKA TESWGKARKE NKELEMKNIM FDCLSAKTSV PCIPKCDLRD FGSVIEQHLK 120 DVNRRREILK RNEVEGSSSS LVIAADVATT STVIPMLEMG SSSVGFHEKI RNQIENTLDV 180 KKTDKDLDLN KKW*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10002555m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006286819.1	1e-130	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	4e-44	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	R0HAM7	1e-140	R0HAM7_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006289132.1	1e-140	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26630.1	2e-84	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Carubv10002555m
Entrez Gene	17881442

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]