PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10002489m
Common NameCARUB_v10002489mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 221aa    MW: 23790.8 Da    PI: 5.9263
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10002489mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.91.7e-38111121101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++apyf +e+ +++fa+vhk+FGasn +kll  +p ++r da+ +l yeA ar+rdPvyG+vg+i++lq+q+++l++e
  Carubv10002489m  11 PCGACKFLRRKCVSECIFAPYFDSEEgTSHFAAVHKVFGASNASKLLMMIPASRRLDAVVTLSYEALARLRDPVYGCVGHIFALQHQVMNLQVE 104
                      7*********************998879****************************************************************** PP

           DUF260  94 lallkeel 101
                      la+++++l
  Carubv10002489m 105 LAYVQTQL 112
                      ****9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.62210112IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3711109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSGGTNGCGG PCGACKFLRR KCVSECIFAP YFDSEEGTSH FAAVHKVFGA SNASKLLMMI  60
PASRRLDAVV TLSYEALARL RDPVYGCVGH IFALQHQVMN LQVELAYVQT QLTSIQRLLP  120
PNPQNNSQTE VASSFNAPLI ASSVDNKSNV LSSSASHNHC MPQQQQQGKE DIEVSRESVD  180
LSTLLGLEDP AEEESDLNAL AREFVSKYLT GGQSRPSSPI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3851125111LOB family transfactor Ramosa2.1
5ly0_B1e-3851125111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10002489m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289084.11e-163LOB domain-containing protein 31
SwissprotO813221e-117LBD31_ARATH; LOB domain-containing protein 31
TrEMBLR0FHZ71e-162R0FHZ7_9BRAS; Uncharacterized protein
STRINGXP_006289084.11e-163(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-107LOB domain-containing protein 31