PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10002099m | ||||||||
Common Name | CARUB_v10002099mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 174aa MW: 19239.2 Da PI: 5.7375 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.4 | 2.6e-32 | 112 | 170 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YY+C+ gCpvkk+ver+++dp++v++tYeg+Hnh+ Carubv10002099m 112 LDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDRDDPSFVITTYEGSHNHS 170 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-34 | 98 | 171 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-28 | 105 | 170 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.182 | 107 | 172 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-37 | 112 | 171 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.9E-26 | 113 | 169 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MNNNADANMA RSFSDDTHSG FELSELDLSD GWMDDDLMSA VSGMNQSYGY QTSDIAAALF 60 SGSSTSFSYP ESPSINTSVA ATAAASPENQ IKKEKKVKER VAFKTRSEVE VLDDGFKWRK 120 YGKKMVKNSP NPRNYYKCSV DGCPVKKRVE RDRDDPSFVI TTYEGSHNHS SMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-27 | 102 | 169 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 6e-27 | 102 | 169 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10002099m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY071847 | 1e-160 | AY071847.1 Arabidopsis thaliana WRKY transcription factor 50 (WRKY50) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288778.1 | 1e-127 | probable WRKY transcription factor 50 | ||||
Swissprot | Q8VWQ5 | 2e-99 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | R0FI22 | 1e-126 | R0FI22_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288778.1 | 1e-127 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6121 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-90 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10002099m |
Entrez Gene | 17883377 |
Publications ? help Back to Top | |||
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