PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10001843m | ||||||||
Common Name | CARUB_v10001764mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NF-YC | ||||||||
Protein Properties | Length: 241aa MW: 26906.3 Da PI: 4.5552 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 33.2 | 1.1e-10 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++de+v +i+ +P l+ska elf+ +l ++ + + +t+ ++++v + +ifdfl ++v + Carubv10001843m 1 MQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDITLSRGAKTVSSFHLKQCVHSFNIFDFLRETVNK 69 889*************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.97E-18 | 1 | 71 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.6E-16 | 1 | 68 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.3E-11 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MQTDEEVGKI AMAVPLLVSK ALELFLQDLC NHTYDITLSR GAKTVSSFHL KQCVHSFNIF 60 DFLRETVNKV PDLGGSDAED QSATKRRKLV EDSNCNDEDF KSTQMHEVKH SGSGRGRRGR 120 GRGRGGGRTG NGLSLKFEED LEDGSPESSR SPSPENRSHE YTSWKKVASH NNPSNVRNFD 180 LNVDLDENGD TATWLERRLE GSPDWPLLGM NDMKLDPDQQ QQQASASDEE DYDEESIDQD 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 3e-16 | 1 | 54 | 21 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 124 | RGRRGRGRGRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10001843m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288499.1 | 1e-179 | dr1-associated corepressor | ||||
TrEMBL | R0FGG8 | 1e-178 | R0FGG8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006288499.1 | 1e-179 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 2e-94 | NF-YC family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10001843m |
Entrez Gene | 17882645 |