PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001772m
Common NameCARUB_v10001772mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 257aa    MW: 29138.1 Da    PI: 9.0212
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001772mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-0597119223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ C+++++++ +L  Hi+  H
  Carubv10001772m  97 SCSVCSRVYPTSRLLSIHISEaH 119
                      6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.46994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM00355596119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003550.17134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAMGMAVDSV GELAFPVWNP IRRRFPPDSP FFASGNVERE LLAKQVALDL TEDEISHLQI  60
IVETESRRIS CPIAGCLERL KSLDHFEDHY NARHTASCSV CSRVYPTSRL LSIHISEAHD  120
SFFQAKVARG YDMYECLVEG CGLKFKNYKA RHQHLVDKHK FPTTFEFFKK TQLSKKRREK  180
LQRQHLSKLK HKEDKGEASS DAMEVEDKAS VDGLVSALST LTTSDTTPSN VSFGRRHGRG  240
LTFVPRSVHR EKRTES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001772m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2283560.0AK228356.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-77-M10.
GenBankBT0031310.0BT003131.1 Arabidopsis thaliana At5g14140 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286544.10.0zinc finger protein 511 isoform X1
TrEMBLR0FBL10.0R0FBL1_9BRAS; Uncharacterized protein
STRINGXP_006286544.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-153zinc ion binding;nucleic acid binding;zinc ion binding