PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001633m
Common NameCARUB_v10001633mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 287aa    MW: 30804.8 Da    PI: 7.9547
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001633mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00092187209123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+  Fs+   L  H+r+H
  Carubv10001633m 187 HECSICKAEFSSGQALGGHMRRH 209
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.3E-12111136IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-9111134No hitNo description
SMARTSM003550.041112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-9182209No hitNo description
Gene3DG3DSA:3.30.160.605.4E-4184211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-12186211IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328187214IPR007087Zinc finger, C2H2
SMARTSM003550.031187209IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTSVLEESGE QARLVLLIKG KRTKRQRSAS PLMTAVSSVC SGERSSLVEA REEEAAGEVE  60
FQGATDEDED MANCLMLLSQ GHKAKSSGDH KLGFFSNKKP VASLGLGLDG VYQCKTCDKS  120
FHSFQALGGH RASHKKPKLG ASVVFKCEEK KTASVSAVET VEAGAVGSFL SLQVTSSDGN  180
KKPEKTHECS ICKAEFSSGQ ALGGHMRRHR GLTVNANAAS TIKTVISSSS HHHEESIRPK  240
TFLQLDLNLP APEDERCCEK PKFTFASKDQ ILLFAAASNS LIDCHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001633m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1627510.0AL162751.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288382.10.0zinc finger protein ZAT5
TrEMBLR0H8M90.0R0H8M9_9BRAS; Uncharacterized protein
STRINGXP_006288382.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-170C2H2 family protein