PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001623m
Common NameCARUB_v10001623mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family E2F/DP
Protein Properties Length: 291aa    MW: 32877.3 Da    PI: 7.5824
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001623mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.88.6e-2449131371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      + +Lr+++ +   +++k e+ +i+t++eva+e++s+                 ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  Carubv10001623m  49 GGGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfatikqnaekplneneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWKG 131
                      5799999999...****9999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.4E-994289IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.107.1E-3644135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-2847131IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.3E-2050131IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.33E-1850132IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.18E-28138239IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.4E-38138280No hitNo description
SMARTSM011381.5E-51138290IPR014889Transcription factor DP, C-terminal
PfamPF087813.7E-33139260IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEMELFVTPE KQRQHPSVSL EKTPVRRRLI VDDESEIGSE KKGQSRTAGG GLRQFSVMVC  60
QKLEAKKITT YKEVADEIIS DFATIKQNAE KPLNENEYNE KNIRRRVYDA LNVFMALDII  120
ARDKKEIRWK GLPITCKKDV EEVKMDRNKV MNSVQKKAAF LKELREKVSS LESLMSRNQE  180
MVVKTQGPAE GFTLPFILLE TNPHAVVEIE ISEDMQLVHL DFNSTPFSVH DDAYILKLMQ  240
EQKQQQNRVS SSSSTHQQSQ HSSAHSSSSS CIASGTSGPV CWNSGSIDTR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-2549133990PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001623m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3190270.0AJ319027.1 Arabidopsis thaliana partial mRNA for E2F dimerisation partner protein (dp2a gene).
GenBankAK1171350.0AK117135.1 Arabidopsis thaliana At5g02470 mRNA for putative DP-2 transcription factor, complete cds, clone: RAFL16-67-D16.
GenBankBT0052860.0BT005286.1 Arabidopsis thaliana At5g02470 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288373.10.0transcription factor-like protein DPA
RefseqXP_023636494.10.0transcription factor-like protein DPA
RefseqXP_023636496.10.0transcription factor-like protein DPA
SwissprotQ9FNY30.0DPA_ARATH; Transcription factor-like protein DPA
TrEMBLR0FH090.0R0FH09_9BRAS; Uncharacterized protein
STRINGXP_006288373.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.30.0Transcription factor DP