PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10001486m
Common NameCARUB_v10001486mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 319aa    MW: 35776.8 Da    PI: 4.9687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10001486mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12156199654
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  A++Y+k+L
  Carubv10001486m 156 LMAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTTILGDAIDYMKEL 199
                      589*********************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-16153216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10156199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-16157214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.37E-5157199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEMELTQLTN KQESNNLDGL KGGFMAMDQF VPNDWNFDYL RFNSPLVETD NVDHPCSSLM  60
NLISQPPPLL HQPPQPLSPP PPPSSPLSSA FEYPFLEDII DSSYYPPPLL LPTSQENNNN  120
VYAPLMVESK SFVSTGVMTN KKKSIKKLGG QPSKNLMAER RRRKRLNDRL SMLRSIVPKI  180
TKMDRTTILG DAIDYMKELL DKINKLQEDD QELGSNSHLN TLITDESLVR NSLKFEVEQR  240
EVDTHIKICC STKPGLLLST VTTLETLGLE IQQCVISCFS DFSLQASCSE VAEQRDFVTS  300
EDTKQALIRN AGYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140162KKKSIKKLGGQPSKNLMAERRRR
2158165ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10001486m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288244.10.0transcription factor bHLH61
SwissprotQ9LXA91e-166BH061_ARATH; Transcription factor bHLH61
TrEMBLR0FFW20.0R0FFW2_9BRAS; Uncharacterized protein
STRINGXP_006288244.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-144bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]