PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_94_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 128aa MW: 14813.7 Da PI: 10.6961 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65.7 | 8.5e-21 | 14 | 59 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + cra_locus_94_iso_3_len_769_ver_3 14 KGPWSPEEDELLQQLVQKHGPRNWSLISKSIQ-GRSGKSCRLRWCNQ 59 79******************************.***********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.759 | 9 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.74E-20 | 11 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-17 | 13 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-20 | 14 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 14 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.28E-16 | 16 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MSSNSMRKDV DRIKGPWSPE EDELLQQLVQ KHGPRNWSLI SKSIQGRSGK SCRLRWCNQL 60 SPQVEXQQQQ QRYLVQQHQQ HVQQQQQQMM MMHNGMGMGM GMGMMQASAA NDGFRNNAIK 120 RIGINKIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 6e-18 | 13 | 80 | 3 | 73 | C-Myb DNA-Binding Domain |
1msf_C | 6e-18 | 13 | 80 | 3 | 73 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00476 | DAP | Transfer from AT4G37260 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009588514.1 | 2e-35 | PREDICTED: transcription factor MYB44 | ||||
Refseq | XP_016478014.1 | 2e-35 | PREDICTED: transcription factor MYB44-like | ||||
Refseq | XP_028080167.1 | 1e-35 | transcription factor MYB44-like | ||||
Swissprot | O23160 | 2e-34 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A328DM19 | 5e-34 | A0A328DM19_9ASTE; Uncharacterized protein | ||||
TrEMBL | A0A484LGT6 | 4e-34 | A0A484LGT6_9ASTE; Uncharacterized protein | ||||
TrEMBL | A0A484MEM6 | 4e-34 | A0A484MEM6_9ASTE; Uncharacterized protein | ||||
STRING | XP_009588514.1 | 8e-35 | (Nicotiana tomentosiformis) |
Publications ? help Back to Top | |||
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