PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8669_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 297aa MW: 32755.1 Da PI: 8.4624

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8669_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.7e-05	235	257	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ nL++H + H cra_locus_8669_iso_4_len_1319_ver_3 235 QCPQCNLRFSSVTNLVNHVEKvH 257 7*****************99888 PP
2	zf-C2H2	16.9	1.8e-05	269	291	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ L+ H + H cra_locus_8669_iso_4_len_1319_ver_3 269 VCPKCSKGFRDPVALVEHVEKeH 291 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	6.8E-5	7	34	No hit	No description
Gene3D	G3DSA:4.10.1110.10	3.2E-11	102	163	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	1.0E-8	105	155	No hit	No description
Pfam	PF01428	6.1E-8	113	152	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.016	234	257	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.683	234	257	IPR007087	Zinc finger, C2H2
Pfam	PF13894	4.6E-4	235	257	No hit	No description
SuperFamily	SSF57667	1.5E-5	235	287	No hit	No description
PROSITE pattern	PS00028	0	236	257	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.4	268	291	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.078	268	296	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	270	291	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGTPAFPNLG KHCSVEDCRQ IDFLPFTCDS CHKIPVNHQS AHSLAGLLFG APELWRHKCP 60 KANQNDVTVV ICPLCAKGVR LIPDESPNIT WESHVNTECD PSNYEKVTKK NKCPVPRCKE 120 ILTFSNTIKC KDCMVEHCLK HRFGPDHNCP GPKRPDTAFQ FSSLLNRSRR NESNSQQAPA 180 TSSSWASTLF RAASSVRATA EAGMAKLSSE FSQASVRESS SNNGHSGGRT GLVEQCPQCN 240 LRFSSVTNLV NHVEKVHERN GIMKSTIDVC PKCSKGFRDP VALVEHVEKE HRGTSKA

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017237224.1	1e-140	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
Swissprot	Q0D5B9	1e-113	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	A0A2R6R574	1e-142	A0A2R6R574_ACTCH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein
TrEMBL	A0A2R6S237	1e-142	A0A2R6S237_ACTCH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein
STRING	XP_009765392.1	1e-139	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5311	22	37

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]