PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8669_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 285aa MW: 31607.8 Da PI: 8.5025

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8669_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.4e-05	223	245	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ nL++H + H cra_locus_8669_iso_1_len_1282_ver_3 223 QCPQCNLRFSSVTNLVNHVEKvH 245 7*****************99888 PP
2	zf-C2H2	17	1.7e-05	257	279	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ L+ H + H cra_locus_8669_iso_1_len_1282_ver_3 257 VCPKCSKGFRDPVALVEHVEKeH 279 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	5.23E-13	7	51	No hit	No description
PROSITE profile	PS51039	7.907	10	59	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	1.7E-10	11	51	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.0037	13	52	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	7.1E-14	13	51	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	3.8E-11	90	151	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	8.37E-9	93	143	No hit	No description
PROSITE profile	PS51039	7.889	98	146	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.029	101	142	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	5.8E-8	101	140	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.016	222	245	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.683	222	245	IPR007087	Zinc finger, C2H2
Pfam	PF13894	4.3E-4	223	245	No hit	No description
SuperFamily	SSF57667	1.4E-5	223	275	No hit	No description
PROSITE pattern	PS00028	0	224	245	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.4	256	279	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.078	256	284	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	258	279	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MGTPAFPNLG KHCSVEDCRQ IDFLPFTCDS CHKVFCLEHR SYGRHKCPKA NQNDVTVVIC 60 PLCAKGVRLI PDESPNITWE SHVNTECDPS NYEKVTKKNK CPVPRCKEIL TFSNTIKCKD 120 CMVEHCLKHR FGPDHNCPGP KRPDTAFQFS SLLNRSRRNE SNSQQAPATS SSWASTLFRA 180 ASSVRATAEA GMAKLSSEFS QASVRESSSN NGHSGGRTGL VEQCPQCNLR FSSVTNLVNH 240 VEKVHERNGI MKSTIDVCPK CSKGFRDPVA LVEHVEKEHR GTSKA

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017237224.1	1e-152	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
Refseq	XP_022856924.1	1e-152	zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like
Swissprot	Q0D5B9	1e-123	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	A0A2R6R574	1e-155	A0A2R6R574_ACTCH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein
STRING	XP_009765392.1	1e-150	(Nicotiana sylvestris)
STRING	XP_010102532.1	1e-149	(Morus notabilis)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]