PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7979_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 535aa MW: 58435.1 Da PI: 6.5233

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7979_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.5e-09	347	394	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq cra_locus_7979_iso_3_len_2242_ver_3 347 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 394 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.72E-11	341	398	No hit	No description
SuperFamily	SSF47459	3.79E-17	341	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-17	343	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.682	343	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-6	347	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-11	349	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MEKENNLFIN DGTQLPYELN CSTEQLRNCI FNPNWDNSMD QNDPFESALS SMVSSPATSN 60 AGVPPPSAGG GENFVLRELI GRLGSICNSG EISPQSYIGG NNSTNNSCYS TPLNSPPKLN 120 LSIMDSQIRG NLPIPRTHLP GHQNLAPFPT DPGFVERAAR FSCFANKGLD GLNSQIGLND 180 SELPHRLVPK LDSGKLSKVS SNQSLKISGS QMEVQDNSDE KFSKLSRSST PENTEVGDSR 240 ENSSVSEQIT KSQNDGNPRK RKAVQRGKAK EPSSANVASE NNENSAKRSK SDEDNVNEKN 300 ATKGKAEQNG TDKAAGDGKS SKDNPKPPEP PKDYIHVRAR RGQATDAHSL AERVRREKIS 360 ERMKLLQDLV PGCNKVTGKA VMLDEIINYV QSLQRQVEFL SMKLATINPR MDFNVEALLS 420 KDVIQSRGSL LAHNMCSSDG STAAAFPYPF QSQTMPMSSI PNGTEMPFSM NHLNAAMGRN 480 PNVQLPPLDN FGESASQVPT FWEDDLQTVV QMGFGQNQTQ NFHGIMATSR MKVEL

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MEKENNLFIN DGTQLPYELN CSTEQLRNCI FNPNWDNSMD QNDPFESALS SMVSSPATSN  60
AGVPPPSAGG GENFVLRELI GRLGSICNSG EISPQSYIGG NNSTNNSCYS TPLNSPPKLN  120
LSIMDSQIRG NLPIPRTHLP GHQNLAPFPT DPGFVERAAR FSCFANKGLD GLNSQIGLND  180
SELPHRLVPK LDSGKLSKVS SNQSLKISGS QMEVQDNSDE KFSKLSRSST PENTEVGDSR  240
ENSSVSEQIT KSQNDGNPRK RKAVQRGKAK EPSSANVASE NNENSAKRSK SDEDNVNEKN  300
ATKGKAEQNG TDKAAGDGKS SKDNPKPPEP PKDYIHVRAR RGQATDAHSL AERVRREKIS  360
ERMKLLQDLV PGCNKVTGKA VMLDEIINYV QSLQRQVEFL SMKLATINPR MDFNVEALLS  420
KDVIQSRGSL LAHNMCSSDG STAAAFPYPF QSQTMPMSSI PNGTEMPFSM NHLNAAMGRN  480
PNVQLPPLDN FGESASQVPT FWEDDLQTVV QMGFGQNQTQ NFHGIMATSR MKVEL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027116989.1	0.0	transcription factor bHLH77-like
TrEMBL	A0A061ERY9	0.0	A0A061ERY9_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
STRING	EOY05079	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83