PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7731_iso_2 | ||||||||
Common Name | GBF2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bZIP | ||||||||
Protein Properties | Length: 394aa MW: 41770.9 Da PI: 7.3238 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 65.7 | 8e-21 | 296 | 358 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ e++ ++ e+++l +++ cra_locus_7731_iso_2_len_1967_ver_3 296 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENNSLRAEVSLIRSEYEQLLAQN 358 89*********************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.0E-30 | 1 | 98 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.3E-46 | 137 | 265 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-18 | 290 | 357 | No hit | No description |
Pfam | PF00170 | 3.1E-19 | 296 | 358 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 7.8E-22 | 296 | 360 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.173 | 298 | 361 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.0E-11 | 299 | 355 | No hit | No description |
CDD | cd14702 | 6.80E-23 | 301 | 351 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 303 | 318 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MGSSEIDKSS KEAKEAKEAK ETPPSSQEQP AATSAGTPDW TGFQAYSPIP PHGFLASSPQ 60 AHPYMWGVQH LMPPYGTPPH PYVAMYPHGG IYAHPSIPPG SYPFSPFAMP SPNGIAEPSV 120 NTPGNMEVDG KASEGKEKLP IKRSRGSLGS LNMITGKNND AGKTSGASAN GACSKSAESA 180 SEGSSEGSDA NSQNESQMKS GNRQDSGETS QNGSGAHGSQ NGGTNTPHSM VAMVPLSASG 240 GVTGPATNLN IGMDYWGTAA SPTVPVVRGK VPSTPVGGGM VPARDPVQAQ LWIQDERELK 300 RQRRKQSNRE SARRSRLRKQ AECDELAQRA EALKEENNSL RAEVSLIRSE YEQLLAQNAA 360 LKERLGEASG QDDPRSSRNE QQHSVQRETA ARSQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 312 | 318 | RRSRLRK |
2 | 312 | 319 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00291 | DAP | Transfer from AT2G35530 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027081338.1 | 0.0 | bZIP transcription factor 16-like isoform X1 | ||||
Refseq | XP_027181213.1 | 0.0 | bZIP transcription factor 16 isoform X1 | ||||
Swissprot | Q501B2 | 1e-156 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | Q9XHQ5 | 0.0 | Q9XHQ5_CATRO; G-Box binding protein 2 | ||||
STRING | XP_008238155.1 | 0.0 | (Prunus mume) |
Publications ? help Back to Top | |||
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