PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7205_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 250aa MW: 27686 Da PI: 5.157 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 6.9e-09 | 12 | 38 | 20 | 48 |
TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqkyl 48 ++ W++Ia++++ Rt++++k++w+++l cra_locus_7205_iso_3_len_1000_ver_3 12 KKK-WAAIASYLP-ERTDNDIKNYWNTHL 38 566.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.447 | 1 | 42 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-8 | 7 | 44 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-12 | 10 | 39 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-7 | 11 | 38 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.65E-7 | 12 | 38 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
XGLFLQIQGS FKKKWAAIAS YLPERTDNDI KNYWNTHLKK KLKMLQTGPD PCSRNGFSSS 60 QSASKGQWER RLQADIKTAK QALQDALTLD GTSSPVPDSK GLFSLAETGG QASNNSNTYA 120 SSTENIARLL KDWARNSSNS KSKKQSKSSS TQHSFNYPAN EYSTSSSVES KNGIELSEAF 180 ESLFGFESFD SSNSEFSQST SPEASLFQGE SKPEITQVPL AMLENWLFDE SSIQGKDLTN 240 FSFDHDEDLF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 43 | LKKKLKM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00395 | DAP | Transfer from AT3G47600 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028109092.1 | 9e-79 | myb-related protein 306-like | ||||
Swissprot | P81392 | 2e-48 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A2N9FVI2 | 2e-76 | A0A2N9FVI2_FAGSY; Uncharacterized protein | ||||
STRING | VIT_14s0108g00830.t01 | 4e-69 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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