PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7071_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 168aa    MW: 18807 Da    PI: 6.9579
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7071_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.94.6e-133088563
                                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                                         ++ +r+++NRe+ArrsR RK++ ++ L   v +L +eN + +  ++  ++++ ++++e+
  cra_locus_7071_iso_2_len_1528_ver_3 30 RKRKRMISNRESARRSRMRKQKHLDDLMAQVTQLRKENNQIITSMNVTTQHYLNVEAEN 88
                                         6789*************************************999999999998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-101970No hitNo description
SMARTSM003381.3E-172690IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.3122891IPR004827Basic-leucine zipper domain
PfamPF001705.3E-103080IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.76E-123082No hitNo description
CDDcd147022.52E-193181No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MASSSGTSSG SSGLQNSGSE EDLQQLMDQR KRKRMISNRE SARRSRMRKQ KHLDDLMAQV  60
TQLRKENNQI ITSMNVTTQH YLNVEAENSI LKAQMNELTH RLQSLNEIID ILNATNNGGC  120
LGNPEESSYG FLGGIGADGF LMNNSWNNFS YVFNHQPLMA SAADMLNY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12950RKRKRMISNRESARRSRMRKQK
24249RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165604.12e-70PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L55e-52BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A068VHK34e-68A0A068VHK3_COFCA; Uncharacterized protein
STRINGSolyc01g109880.2.14e-66(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]