PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7071_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 120aa MW: 13578.9 Da PI: 10.2167

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7071_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.2	5.7e-11	30	83	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++ +r+++NRe+ArrsR RK++ ++ L + + +eN + ++ ++ + + cra_locus_7071_iso_1_len_1014_ver_3 30 RKRKRMISNRESARRSRMRKQKHLDDLMSQLAHIRNENNQILRSMNVTTQSYLN 83 6789**********************************9877766666666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.6E-15	26	90	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.7E-10	27	105	No hit	No description
PROSITE profile	PS50217	9.979	28	91	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.78E-12	30	82	No hit	No description
Pfam	PF00170	2.1E-8	30	73	IPR004827	Basic-leucine zipper domain
CDD	cd14702	5.77E-13	31	81	No hit	No description
PROSITE pattern	PS00036	0	33	48	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009845	Biological Process	seed germination
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MASSSGTSSG SSGLQNSGSE EDLQQLMDQR KRKRMISNRE SARRSRMRKQ KHLDDLMSQL 60 AHIRNENNQI LRSMNVTTQS YLNIEAENSI LRAQVSELGY RLESLTEIIS FLNANNSGIX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	50	RKRKRMISNRESARRSRMRKQK
2	42	49	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269\|PubMed:23461773}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00239	DAP	Transfer from AT1G75390	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165604.1	4e-60	PREDICTED: bZIP transcription factor 11-like
Swissprot	C0Z2L5	2e-43	BZP44_ARATH; bZIP transcription factor 44
TrEMBL	A0A1S4A5L7	6e-58	A0A1S4A5L7_TOBAC; bZIP transcription factor 53-like
TrEMBL	A0A1U7WYG2	6e-58	A0A1U7WYG2_NICSY; ocs element-binding factor 1-like
STRING	XP_009782351.1	1e-58	(Nicotiana sylvestris)

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]