PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6959_iso_7

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 271aa MW: 30032.8 Da PI: 8.0775

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6959_iso_7	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.3	4e-34	22	76	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl cra_locus_6959_iso_7_len_1882_ver_3 22 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 76 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.337	19	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-32	21	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-18	21	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-26	22	77	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-9	24	75	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-23	108	154	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDFMGGGNNN MNNSNNSNLA SKQRLRWTNE LHERFVDAVA QLGGPDRATP KGVLRVMGVQ 60 GLTIYHVKSH LQKYRLAKYL PDSSSDGKKT DKKDSKEMLS NLDGSSGMQI TEALKLQMEV 120 QKRLHEQLEV QKQLQLRIEA QGKYLKKIIE EQQRLSGVLS DAPSAGVTAN QLGDNCPESE 180 IRNDPGTPPP TSESPVMDKP SKERAAAKSF SLDESFSSPQ EPQTPESGCR INLFENMDAD 240 RSSKKQRLSP SGLPPQISNV CPPFEQPHSI F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-25	22	79	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-25	22	79	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-25	22	79	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-25	22	79	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006349121.1	1e-138	PREDICTED: myb family transcription factor APL-like
Refseq	XP_006349122.1	1e-138	PREDICTED: myb family transcription factor APL-like
Refseq	XP_015164958.1	1e-138	PREDICTED: myb family transcription factor APL-like
Swissprot	Q9SJW0	1e-114	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	M1ABL4	1e-136	M1ABL4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400019099	1e-137	(Solanum tuberosum)