PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6959_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 249aa MW: 27742.3 Da PI: 8.0894 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.7 | 1.3e-33 | 1 | 54 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl cra_locus_6959_iso_4_len_1238_ver_3 1 QRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 54 7****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.988 | 1 | 57 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.3E-25 | 1 | 55 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.8E-31 | 1 | 55 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.88E-17 | 1 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.6E-10 | 2 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.7E-23 | 86 | 132 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
QRLRWTHELH ERFVDAVAQL GGPDRATPKG VLRVMGVQGL TIYHVKSHLQ KYRLAKYLPD 60 SSSDGKKTDK KDSKEMLSNL DGSSGMQITE ALKLQMEVQK RLHEQLEVQK QLQLRIEAQG 120 KYLKKIIEEQ QRLSGVLSDA PSAGVTANQL GDNCPESEIR NDPGTPPPTS ESPVMDKPSK 180 ERAAAKSFSL DESFSSPQEP QTPESGCRIN LFENMDADRS SKKQRLSPSG LPPQISNVCP 240 PFEQPHSIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-23 | 2 | 57 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-23 | 2 | 57 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-23 | 2 | 57 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-23 | 2 | 57 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-23 | 2 | 57 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-23 | 2 | 57 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-23 | 2 | 57 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-23 | 2 | 57 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-23 | 2 | 57 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-23 | 2 | 57 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-23 | 2 | 57 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-23 | 2 | 57 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349121.1 | 1e-129 | PREDICTED: myb family transcription factor APL-like | ||||
Refseq | XP_006349122.1 | 1e-129 | PREDICTED: myb family transcription factor APL-like | ||||
Refseq | XP_015164958.1 | 1e-129 | PREDICTED: myb family transcription factor APL-like | ||||
Swissprot | Q9SJW0 | 1e-111 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0V0HT25 | 1e-128 | A0A0V0HT25_SOLCH; Putative myb family transcription factor APL-like | ||||
STRING | PGSC0003DMT400019099 | 1e-129 | (Solanum tuberosum) |