PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6945_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 238aa    MW: 26554 Da    PI: 8.6868
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6945_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.4e-1994148256
                                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                         rk+ ++tk+q   Lee F+++++++ +++++LA++l+L  rqV vWFqNrRa+ k
  cra_locus_6945_iso_4_len_953_ver_3  94 RKKLRLTKSQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 148
                                         678899***********************************************98 PP
2HD-ZIP_I/II124.45.3e-4094183191
                         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 
                                         +kk+rl+k q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++
  cra_locus_6945_iso_4_len_953_ver_3  94 RKKLRLTKSQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTD 168
                                         69************************************************************************* PP

                         HD-ZIP_I/II  76 enerLekeveeLreel 91 
                                         en+rL+ke +eL+ +l
  cra_locus_6945_iso_4_len_953_ver_3 169 ENRRLQKELQELK-AL 183
                                         ************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.1E-1981151IPR009057Homeodomain-like
PROSITE profilePS5007117.60590150IPR001356Homeobox domain
SMARTSM003896.8E-1692154IPR001356Homeobox domain
CDDcd000863.81E-1694151No hitNo description
PfamPF000461.1E-1694148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-1894148IPR009057Homeodomain-like
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PfamPF021834.2E-10150184IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.0E-25150193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MALDDFSSPG LVLGLGFPSS TAAAVAADNN KFVTKIRPKE TNPTTTTTAA SSFSNVSVKR  60
EREICTTGSE ELEVERVISS SRVSDEDDDG SNGRKKLRLT KSQSALLEES FKQHSTLNPK  120
QKQDLARELN LRPRQVEVWF QNRRARTKLK QTEVDCEFLK KCCETLTDEN RRLQKELQEL  180
KALKLSQPFY MQLPAATLTM CPSCERIGGE NTGPKGPSFP MASKPHFYNP FTNQSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099420.11e-114homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-87HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A4D8YV981e-111A0A4D8YV98_SALSN; Homeobox-leucine zipper protein
STRINGVIT_00s0732g00010.t011e-108(Vitis vinifera)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]