PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_6581_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 33186.8 Da PI: 5.8312 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl cra_locus_6581_iso_4_len_1035_ver_3 31 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 78 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46 | 1.2e-14 | 84 | 129 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l cra_locus_6581_iso_4_len_1035_ver_3 84 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 129 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-24 | 22 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.075 | 26 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-30 | 28 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-14 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 31 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.15E-11 | 33 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-25 | 82 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-13 | 83 | 131 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.965 | 83 | 133 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.8E-13 | 84 | 129 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.86E-9 | 86 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
KSTHKVEEAE EKEIIINMGR PPCCDKVGIK KGPWTPEEDI ILVSYIQEHG PGNWRSVPTN 60 TGLLRCSKSC RLRWTNYLRP GIKRGNFTPH EEGMIIHLQA LLGNKWAAIA SYLPQRTDND 120 IKNYWNTHLK KKIKKFQSNL DPQISSNINL TPQPSFQFVS KSFNESNTED GKVNTTSSSV 180 YASSAENISR LLEGWMRSSS SNSNSSPKNS GFHHQNGGND DDQVVGNGTV CKHEFDSLDN 240 LDYGNNNHDD DDDDDQEKKL GKVENIVNPP PLSFLENWLL DETIGQEVMG IPSIF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-24 | 29 | 133 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00132 | DAP | Transfer from AT1G08810 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027066033.1 | 1e-118 | myb-related protein 306-like | ||||
Refseq | XP_027175430.1 | 1e-118 | myb-related protein 306 | ||||
Swissprot | B3VTV7 | 1e-112 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | A0A068UWH9 | 1e-114 | A0A068UWH9_COFCA; Uncharacterized protein | ||||
STRING | XP_008240570.1 | 1e-114 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Publications ? help Back to Top | |||
---|---|---|---|
|