PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_625_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 464aa MW: 50055.8 Da PI: 7.3101

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_625_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.1e-10	296	344	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq cra_locus_625_iso_6_len_2866_ver_3 296 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 344 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.85E-17	291	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.03E-11	291	348	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.4E-16	293	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.472	293	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-7	296	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-10	299	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MATKDNVGFQ PTGGGNNILN CPSSGMDSNL ISDKVAMCSD SMFKNSSTGV ETFYGSGWDP 60 IVSLNHQENY GGSSVVPHNE FANSDYPVVL GNQSMGSSSH LVHYPSDSGL VDMLPKISCF 120 GSGSFSEMVS SFGLQDCGQV TETGSHINGT SNKGVAYQEG GQNSGGGALG SSSNGKKKRK 180 TSDSPSPLHS KKVKLPDFLS SYNFGVLFQN VIFQRVIYII ICLLKNVEGE QQKDLSGNSS 240 ECSKEQDEMK QIMEQNNSTN FRSKQAGKQI KDNSSNGEPS KETYIHVRAK RGQATNSHSL 300 AERVRRERIS ERMRLLQELV PGCNKITGKA VMLDEIINYV QSLQQQVEFL SMKLATVNPE 360 LNIDLDQIFS KDILHASRGT SAAATLGIRP TMNPSHAFPG FPPGTFPGIP GATPPFHPPL 420 PQAVWDSELQ NVFAMGFDSN PSANNLGPNA GRSKLDLXRV GVKA

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MATKDNVGFQ PTGGGNNILN CPSSGMDSNL ISDKVAMCSD SMFKNSSTGV ETFYGSGWDP  60
IVSLNHQENY GGSSVVPHNE FANSDYPVVL GNQSMGSSSH LVHYPSDSGL VDMLPKISCF  120
GSGSFSEMVS SFGLQDCGQV TETGSHINGT SNKGVAYQEG GQNSGGGALG SSSNGKKKRK  180
TSDSPSPLHS KKVKLPDFLS SYNFGVLFQN VIFQRVIYII ICLLKNVEGE QQKDLSGNSS  240
ECSKEQDEMK QIMEQNNSTN FRSKQAGKQI KDNSSNGEPS KETYIHVRAK RGQATNSHSL  300
AERVRRERIS ERMRLLQELV PGCNKITGKA VMLDEIINYV QSLQQQVEFL SMKLATVNPE  360
LNIDLDQIFS KDILHASRGT SAAATLGIRP TMNPSHAFPG FPPGTFPGIP GATPPFHPPL  420
PQAVWDSELQ NVFAMGFDSN PSANNLGPNA GRSKLDLXRV GVKA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00135	DAP	Transfer from AT1G10120	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092757.1	0.0	transcription factor bHLH74-like isoform X1
Refseq	XP_027092758.1	0.0	transcription factor bHLH74-like isoform X1
TrEMBL	A0A438KMH0	1e-165	A0A438KMH0_VITVI; Transcription factor bHLH74
STRING	VIT_18s0001g08600.t01	1e-164	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5250	24	35