PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6222_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 406aa    MW: 46585.8 Da    PI: 6.2436
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6222_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1123.9e-35131042102
                                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS
                         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 
                                          F+ k+ye+++d+++++++sws++++sf+v+d+ efa+++LpkyFkhsnf+SF+RQLn+YgF+k++ e+      
  cra_locus_6222_iso_1_len_2712_ver_3  13 FIAKIYEMVDDSSTNSIVSWSQSNRSFIVWDSLEFARDLLPKYFKHSNFSSFIRQLNTYGFRKIDPEQ------ 80 
                                          9***************************************************************9998...... PP

                                          TTSEEEEESXXXXXXXXXXXXXXXXXX CS
                         HSF_DNA-bind  76 ekiweFkhksFkkgkkellekikrkks 102
                                             weF+++ F +g+ +ll++i+r+k 
  cra_locus_6222_iso_1_len_2712_ver_3  81 ---WEFANDDFVRGQPHLLKNIHRRKP 104
                                          ...*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.4E-359102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-609102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.0E-3810102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-3113102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-195163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDELCSSNAL PPFIAKIYEM VDDSSTNSIV SWSQSNRSFI VWDSLEFARD LLPKYFKHSN  60
FSSFIRQLNT YGFRKIDPEQ WEFANDDFVR GQPHLLKNIH RRKPVHSHSG QGSSQSPLAE  120
IERQGYKDDI ERLKSEKESL HLELYRHKQE QEALELQLKS MTEHVKLVEQ HHKSMISILA  180
RALQKPMAAL DLMGQSDKHD KKRRLPGNNR LSNEISMEDN HIDSSQKLSK EDLNVTSLLA  240
FNKDILDQFE ASLSLWENIL LDIRQTYGRH NSSLGLDKST SRAESPAVSY TQLNDDQYVD  300
VRPKTSGIDM NREPNTIAVT ENGDLQERGA ANPRNAPTGV NDVFWEQFLT ENPGSTDASE  360
VQSERKDADC RKNETKPVDP AKFWWNSKSL NNHREQLGHL APAERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-241010226129Heat shock factor protein 1
5d5v_B2e-241010226129Heat shock factor protein 1
5d5v_D2e-241010226129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198635.10.0PREDICTED: heat stress transcription factor A-4c-like
RefseqXP_019198637.10.0PREDICTED: heat stress transcription factor A-4c-like
TrEMBLA0A314L5061e-178A0A314L506_NICAT; Heat stress transcription factor a-4a
STRINGXP_009592186.11e-177(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344