PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6088_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 573aa    MW: 63659.8 Da    PI: 7.718
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6088_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.7e-32239295259
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+  +++++ei+Y+g+Hnh 
  cra_locus_6088_iso_4_len_2046_ver_3 239 EDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERNL-EGHITEIVYKGNHNHA 295
                                          7****************************************.***************7 PP
2WRKY105.62.6e-33405463159
                                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  cra_locus_6088_iso_4_len_2046_ver_3 405 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCPVRKHVERASHDLRAVITTYEGKHNHD 463
                                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-27228297IPR003657WRKY domain
SuperFamilySSF1182901.31E-23234297IPR003657WRKY domain
SMARTSM007742.1E-33238296IPR003657WRKY domain
PfamPF031068.3E-24239294IPR003657WRKY domain
PROSITE profilePS5081122.355239297IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-37390465IPR003657WRKY domain
SuperFamilySSF1182902.22E-29397465IPR003657WRKY domain
PROSITE profilePS5081138.228400465IPR003657WRKY domain
SMARTSM007745.8E-39405464IPR003657WRKY domain
PfamPF031066.5E-26406463IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MASSGGSLNT SSNSYSNFSP MAPSFIDLLS SNNREEFMNS NNNRSSSNSN SNSFGWGGFP  60
RTDNQVPKFK SFPPSSLPIS PSPVSPSSYL SFPPSLSPSV LLDSPVLFGN SNALPSPTTG  120
TFAGLGTKED DEKKYSEFSF QSQTRPPVSL SSMFQSSAEK SSSQEGWTFM SQQNNKSTES  180
SSSTKTDIHH QSKSTPPNQT NFSHGGNMQT NTNDNNNNNN NNYSHQQPSQ YLREQRKSED  240
GYNWRKYGQK QVKGSENPRS YYKCTFPSCP TKKKVERNLE GHITEIVYKG NHNHAKPQST  300
RRSSSSSSIQ NPQFLNSEFS NSQSNTFGEI DSFVNNENSS ASFGDDDFEQ NSPVSNSRDD  360
DDSEQPDAKR WKVDQNENEA ISVSGSRTVR EPRIVVQTTS DIDILDDGYR WRKYGQKVVK  420
GNPNPRSYYK CTYAGCPVRK HVERASHDLR AVITTYEGKH NHDVPAARGS GSYTVNRPSA  480
VNNSGGHLPM TTMASNNHNH NHSMNSSVPS FPNSLQNNNT LLRGQSHQTP YTLQMLPNPG  540
NFVPNSNMQQ MDNSFSLAKE EPKDDFFSDL SFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-33239466878Probable WRKY transcription factor 4
2lex_A7e-33239466878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068692.10.0probable WRKY transcription factor 33
TrEMBLA0A068VGV00.0A0A068VGV0_COFCA; Uncharacterized protein
STRINGXP_009797862.11e-179(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460