PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6071_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 541aa MW: 61403.5 Da PI: 5.3343

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6071_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.1	1e-27	48	131	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 rW+++e+laL+++r++m+ ++r++ lk+plW+evs+k+ e gf+rs+ +Ckek+en+ k++k++k+ +++r+++ cra_locus_6071_iso_4_len_2166_ver_3 48 RWPREETLALLKIRSDMDLAFRDSTLKAPLWDEVSRKLGELGFHRSARKCKEKFENIFKYHKRTKDCRSGRQNG 121 8*******************************************************************9777 PP trihelix 75 ssstcpyfdqle 86 +s +++f+qle cra_locus_6071_iso_4_len_2166_ver_3 122 KS--YRFFEQLE 131 76..****97 PP
2	trihelix	95.9	3.8e-30	362	446	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 rW+k ev aL+++r++++ +++++ lk+plWeevs +m++ g+ r++k+Ckekwen+nk+y+++ke++k+r +e cra_locus_6071_iso_4_len_2166_ver_3 362 RWPKAEVEALVRLRTNLGMQFQDNGLKGPLWEEVSLAMKKLGYDRNAKRCKEKWENINKYYRRVKESQKRR-PE 434 8*******************************************************************97.9 PP trihelix 75 ssstcpyfdqle 86 ss+tcpyf+ l+ cra_locus_6071_iso_4_len_2166_ver_3 435 SSKTCPYFHLLD 446 *********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.001	45	107	IPR001005	SANT/Myb domain
CDD	cd12203	1.73E-22	47	112	No hit	No description
PROSITE profile	PS50090	7.155	47	105	IPR017877	Myb-like domain
Pfam	PF13837	7.1E-19	47	132	No hit	No description
SMART	SM00717	0.026	359	421	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.422	361	419	IPR017877	Myb-like domain
CDD	cd12203	7.54E-23	361	426	No hit	No description
Pfam	PF13837	1.1E-21	361	448	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MVGESSVFLD NSGGGGDGSG GAASSAAEEM VFGGGGEEER GRGEAGNRWP REETLALLKI 60 RSDMDLAFRD STLKAPLWDE VSRKLGELGF HRSARKCKEK FENIFKYHKR TKDCRSGRQN 120 GKSYRFFEQL EMFDNQPSLP SPALNQIQSY AVETTSATEP MVIKPTSVSL DFVASRPTQS 180 LNMDALTPST STTSSSGRDS EGSIKKKRKL VDYFEKLMRE VLEKQENLQN QLLNALEKCE 240 RERMAREEAW KKQQMDRIRK EQEILAHERA IAAAKDAAVM AFLQKISEQT IPMQFPETPV 300 PVTGKHAGTD QVKTPSPLPE NIDKRDTVVE NNINKSDSVI EKAIEQQENG ANENFSQSSA 360 SRWPKAEVEA LVRLRTNLGM QFQDNGLKGP LWEEVSLAMK KLGYDRNAKR CKEKWENINK 420 YYRRVKESQK RRPESSKTCP YFHLLDSLYE RKSNRVEQNP DWSGANLKPE DILMQMMNRQ 480 QQQHQQPQQP QSLIEDGLRE NMDQNREDEA EEDDEEEDDE NGNGYELVAN KPSSVASMGV 540 S

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MVGESSVFLD NSGGGGDGSG GAASSAAEEM VFGGGGEEER GRGEAGNRWP REETLALLKI  60
RSDMDLAFRD STLKAPLWDE VSRKLGELGF HRSARKCKEK FENIFKYHKR TKDCRSGRQN  120
GKSYRFFEQL EMFDNQPSLP SPALNQIQSY AVETTSATEP MVIKPTSVSL DFVASRPTQS  180
LNMDALTPST STTSSSGRDS EGSIKKKRKL VDYFEKLMRE VLEKQENLQN QLLNALEKCE  240
RERMAREEAW KKQQMDRIRK EQEILAHERA IAAAKDAAVM AFLQKISEQT IPMQFPETPV  300
PVTGKHAGTD QVKTPSPLPE NIDKRDTVVE NNINKSDSVI EKAIEQQENG ANENFSQSSA  360
SRWPKAEVEA LVRLRTNLGM QFQDNGLKGP LWEEVSLAMK KLGYDRNAKR CKEKWENINK  420
YYRRVKESQK RRPESSKTCP YFHLLDSLYE RKSNRVEQNP DWSGANLKPE DILMQMMNRQ  480
QQQHQQPQQP QSLIEDGLRE NMDQNREDEA EEDDEEEDDE NGNGYELVAN KPSSVASMGV  540
S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	209	KKKRKL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027075443.1	0.0	trihelix transcription factor GT-2-like
TrEMBL	A0A068UW86	0.0	A0A068UW86_COFCA; Uncharacterized protein
STRING	VIT_04s0044g00510.t01	1e-166	(Vitis vinifera)
STRING	Solyc11g005380.1.1	1e-166	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9794	23	28