PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5474_iso_1 | ||||||||
Common Name | orca1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 376aa MW: 41079.8 Da PI: 4.747 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.9e-18 | 79 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p + r r +lg+f a eAa a+++a+++++g cra_locus_5474_iso_1_len_1799_ver_3 79 CKYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFRNAIEAALAYDEAARAMYG 129 79*****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-12 | 79 | 129 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.75E-29 | 79 | 138 | No hit | No description |
SMART | SM00380 | 1.3E-33 | 80 | 143 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-30 | 80 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.56 | 80 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-20 | 80 | 137 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-8 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MALLDQASNL SPMPFDFTRK RKSRRRDGTK NVAETLAKWK EYNEKLDALD GGKPARKVPA 60 KGSKKGCMKG KGGPENSHCK YRGVRQRTWG KWVAEIREPN RGSRLWLGTF RNAIEAALAY 120 DEAARAMYGP CARLNLPNYR ASEESSSLPT TSGSDTTTAS GISEVSVYED KKFTPVVSGL 180 KQDDKGESLE SADSKPQLLV DAGTPMSAVK EEPKEYQVMD SQSEGQFGDE EPPSKLVCKE 240 VDFGQDQAVV PAVKNAEEMG GEMGGDILKG CSLSEMFDVD ELLSVLDSTP LHASDFQHGM 300 GNGNVKAEAA YNYAPSWDSA FQLQNQDPKL GSQQHMAQTP PEINSGLDFL QPGRQEDSYF 360 TLGDLDFLDL GAELGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-16 | 81 | 137 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-15 | 78 | 138 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 22 | TRKRKS |
2 | 18 | 26 | RKRKSRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019245341.1 | 1e-100 | PREDICTED: dehydration-responsive element-binding protein 2A-like | ||||
TrEMBL | Q9LEM7 | 0.0 | Q9LEM7_CATRO; AP2-domain DNA-binding protein | ||||
STRING | XP_009594350.1 | 4e-98 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3701 | 24 | 45 |
Publications ? help Back to Top | |||
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