PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5366_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 483aa    MW: 55276.1 Da    PI: 4.3506
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5366_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.3e-52191452128
                                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkr 73 
                                          ppGfrFhPtdeelv +yLk+k+ +++++l +vi e+d+yk++P++Lp  +k+k+++++w+fFs+rd+ky++g r
  cra_locus_5366_iso_3_len_1889_ver_3  19 PPGFRFHPTDEELVLYYLKRKICRRRHRL-DVIGETDVYKWDPEELPeiSKLKTGDRQWFFFSPRDRKYPNGAR 91 
                                          9*************************999.9***************95449999******************** PP

                                  NAM  74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                          +nrat++gyWkatgkd+ +++ +++ vg+kktLvfy+grap+ge+tdWvmhey++
  cra_locus_5366_iso_3_len_1889_ver_3  92 SNRATRHGYWKATGKDRIITC-NSRPVGVKKTLVFYRGRAPTGERTDWVMHEYTM 145
                                          *********************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-5814167IPR003441NAC domain
PROSITE profilePS5100555.22818167IPR003441NAC domain
PfamPF023651.0E-2719144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MKVTEKDMSS CFDDGKFFPP GFRFHPTDEE LVLYYLKRKI CRRRHRLDVI GETDVYKWDP  60
EELPEISKLK TGDRQWFFFS PRDRKYPNGA RSNRATRHGY WKATGKDRII TCNSRPVGVK  120
KTLVFYRGRA PTGERTDWVM HEYTMDEDEL KRCPAKEYYA LYKVFKKSGP GPKNGEQYGA  180
PFREEDWADE VEPNGLVERC KSVEQVAECV PVDDNRINSQ LQSQLEDLEE FMNRIADDAI  240
LEPPPVDDFA YALGELVREE EAQSNIVDQS SKEYNLPEQS IVVLPHCQQY DVQASYDLTQ  300
SATSQFQLHE TSEVTSAPKG HIPEPYIVEE DFLEDFLELD DLMGPDPSVQ RSHKQAEAHG  360
NEDSIDELDG LFEFELYKDA SLVLSEVGPG GEGQLCQTYV NNMVSKAADP VSNLYSNNFE  420
TGTVNYQQTS HSPIENEVNF QQWERCSVFT PAEAQQGTIT PAVPGTETTD DFVGALYDWV  480
SQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-461816717165NO APICAL MERISTEM PROTEIN
1ut4_B5e-461816717165NO APICAL MERISTEM PROTEIN
1ut7_A5e-461816717165NO APICAL MERISTEM PROTEIN
1ut7_B5e-461816717165NO APICAL MERISTEM PROTEIN
3swm_A5e-461816720168NAC domain-containing protein 19
3swm_B5e-461816720168NAC domain-containing protein 19
3swm_C5e-461816720168NAC domain-containing protein 19
3swm_D5e-461816720168NAC domain-containing protein 19
3swp_A5e-461816720168NAC domain-containing protein 19
3swp_B5e-461816720168NAC domain-containing protein 19
3swp_C5e-461816720168NAC domain-containing protein 19
3swp_D5e-461816720168NAC domain-containing protein 19
4dul_A5e-461816717165NAC domain-containing protein 19
4dul_B5e-461816717165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027094209.10.0NAC domain-containing protein 17-like isoform X1
RefseqXP_027094210.10.0NAC domain-containing protein 17-like isoform X2
RefseqXP_027148212.10.0NAC domain-containing protein 17-like
SwissprotQ9XIC51e-117NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A068TZ020.0A0A068TZ02_COFCA; Uncharacterized protein
STRINGXP_009613291.11e-179(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]