PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5263_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C3H | ||||||||
Protein Properties | Length: 676aa MW: 73491.1 Da PI: 6.3664 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.8 | 9.1e-09 | 254 | 274 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd+C +aHg cra_locus_5263_iso_4_len_2543_ver_3 254 PCPDFRK-GSCQRGDTCEYAHG 274 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.02E-15 | 48 | 138 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 6.4E-18 | 51 | 157 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.4E-8 | 53 | 122 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.98 | 53 | 156 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.02 | 53 | 83 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 2.96E-16 | 55 | 151 | No hit | No description |
PROSITE profile | PS50088 | 12.93 | 88 | 123 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 7.8E-5 | 88 | 120 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 3.8E-5 | 249 | 275 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 253 | 276 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-6 | 254 | 274 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.695 | 254 | 276 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-4 | 282 | 312 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 31 | 284 | 307 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MEPLSPSCSD LLEFSASDDL SGFKVAVEEH GRSVDESGIW YGRKLGLKKM GFEERTPIMI 60 ASMFGSKRVL NYILEKGVVD VNRACGSDGA TALHCAVAGG SAASHEVVKL LLDASADVNL 120 VDANGRRPAD LIASVGNSCF NSRRKMLQLL LNGDSNHLEG SELNDQLMEQ AENQQVLTPV 180 ASREGTEKKE YPVDPSLPDI KNGIYGTDEF RMYTFKVKPC SRAYSHDWTE CPFVHPGENA 240 RRRDPRKYHY SCVPCPDFRK GSCQRGDTCE YAHGIFECWL HPAQYRTRLC KDETNCARRV 300 CFFAHKPEEL RPLYASTGSA VPSPRSLSSG ASAFDLASVS PLNLGSPSAM MPPTSTPPMT 360 PSGASSPIGG SIWANQSTLI PPTLQLPGSR LKSSINARDI DFDVDLSGLD HLRQQQFFDD 420 LNTISSPSSW SNGLGTSVDR NVEAIRHAGL TPTNLDDIFG NNIDSTILSQ LQGLKVDARS 480 SQLLSPNAIQ LRHNMNQQLR QSYSNSLSPS PVRTSSSSFG IDSSGSAAAV LSPRAAAFAK 540 RSQSFIDRGP VNRLSGISSP ISPAAAGGMH PSNLSDWSSP DGKLDWGIQK EEINKLRKSA 600 SFGFRNNGNN LGTAAGATSV PRTINEPDTT WVPSARPSEV DFDEHHQQQH YLNGGGQEML 660 PLWVDQLCME QEQIVA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021682553.1 | 0.0 | zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A067LPM4 | 0.0 | A0A067LPM4_JATCU; Uncharacterized protein | ||||
STRING | EOY33703 | 0.0 | (Theobroma cacao) | ||||
STRING | XP_006425080.1 | 0.0 | (Citrus clementina) |