PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_507_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HD-ZIP

Protein Properties

Length: 331aa MW: 36789.4 Da PI: 4.3044

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_507_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4.2e-19	20	73	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k cra_locus_507_iso_6_len_1834_ver_3 20 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 73 566899***********************************************9 PP
2	HD-ZIP_I/II	130.4	6.8e-42	19	111	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy Lk++y++lk+ cra_locus_507_iso_6_len_1834_ver_3 19 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGILKANYESLKH 93 69*********************************************************************** PP HD-ZIP_I/II 76 enerLekeveeLreelke 93 + e+L++++e+L +e++e cra_locus_507_iso_6_len_1834_ver_3 94 SYESLQHDNEALVKEIRE 111 ***********99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.6E-19	14	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	15	75	IPR001356	Homeobox domain
SMART	SM00389	4.4E-18	18	79	IPR001356	Homeobox domain
Pfam	PF00046	2.7E-16	20	73	IPR001356	Homeobox domain
CDD	cd00086	9.53E-17	20	76	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.3E-20	22	81	IPR009057	Homeodomain-like
PRINTS	PR00031	9.6E-6	46	55	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.6E-6	55	71	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.2E-18	75	117	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009788	Biological Process	negative regulation of abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MLEGLDEEGC VEESGHIPEK KRRLSVDQVK ALEKNFEVEN KLEPERKVKL AQELGLQPRQ 60 VAVWFQNRRA RWKTKQLERD YGILKANYES LKHSYESLQH DNEALVKEIR ELKGKLQEDK 120 MESKISVKEE GMMMMVSDEC EEERAKRAPP QMVDIIPECC DDEEDDINEA TDLNFESFKN 180 NNGGGGGLIM GSSLFTDFKD GSSDSDSSAI LNEENNNNNI STSPNNNAAI SSSSAAGGGG 240 GVGGILVQSP HQFFNCSSIN GFQFSTDSKE EILLGGDATA HKAEAAASAY QPQFVKIEEH 300 NFFSGDESCS TFFSDDQPPS LHWGDCPEDW N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	75	RRARWKTKQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00271	DAP	Transfer from AT2G22430	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074840.1	1e-135	homeobox-leucine zipper protein ATHB-6
Refseq	XP_027179939.1	1e-135	homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A068U003	1e-134	A0A068U003_COFCA; Uncharacterized protein
STRING	POPTR_0005s07290.1	1e-106	(Populus trichocarpa)