PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4684_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 479aa    MW: 52073.4 Da    PI: 8.2476
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4684_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-095683129
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                                         r rWT+eE++++++a k++G   W++I  
  cra_locus_4684_iso_1_len_2600_ver_3 56 RERWTEEEHKKFLEALKLYGRA-WRRIEG 83
                                         78******************88.***965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.82E-74182IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-75482IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.0E-55683IPR009057Homeodomain-like
PfamPF002495.1E-65681IPR001005SANT/Myb domain
CDDcd001678.63E-45881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAIQGQSNNS ESSSTISIGN QISLHVDIPS TKNEQFQCED DCLPKVRKPY TITKQRERWT  60
EEEHKKFLEA LKLYGRAWRR IEGCAESTNG DSGSGKVIEI PPPRPKRKPL HPYPRKLVSP  120
AKSGTATSQK LTQTVSPNIS SPAEEHQSPT SVLSAPCSDT PGTTDSATSD GSESLSPISS  180
VVGAKSVGFV LSELPDLTSE TKRSPSSSQV NSSADNKSPS TSQVNNCANQ ADQLHLKLEL  240
FPQDNAFDKE GSVEVSSSQI FKLFGKTVLV IDPSRPSSST PGAGKVQPSH QNDGKSNSTK  300
VPLGESECLR RALPCKARGN LYPSSLQREC PDTLLCGPFH SLPWLMMYQG DSSASFVQVH  360
SPIAIKAQPL LDKKELHRVQ SCKGGSSTGS DAESESIETV EDKNIEVKFR ELSQEGEVQK  420
QKLPLLKPGA KAASFFRQKA NSSKCGKGFV PYKRCLSDRD TLSAITGEER EEQRVRLCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075006.11e-125protein REVEILLE 1-like isoform X1
TrEMBLA1DR850.0A1DR85_CATRO; MYB transcription factor (Fragment)