PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_45790_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 355aa    MW: 39224.4 Da    PI: 7.3776
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_45790_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.7e-11163196538
                                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 
                                           k  rr+++NReAAr+sR+RKka++++Le    +L
  cra_locus_45790_iso_1_len_1062_ver_3 163 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKL 196
                                           7789***********************9754444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.2E-9158207No hitNo description
SMARTSM003384.8E-7159225IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.002161205IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.17E-7163203No hitNo description
CDDcd147081.62E-23163214No hitNo description
PfamPF001702.0E-8163197IPR004827Basic-leucine zipper domain
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
PfamPF141442.1E-30254329IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
XSSSSLIPSN FISKESSGGG GAYDLGELDQ ALFLYLDGQE QQPSSAIHDQ RQNCGMRPPT  60
LNIFPSQPMH VVEPSSSANK TSTGGGLVSN SPSTSGSKRS SERSSMDLSN SNPRNDIPSA  120
STPTPTPPHH QPSKAVKREG NRRGPSSSSH EQQIEGPKTP DPKTLRRLAQ NREAARKSRL  180
RKKAYVQQLE SSRIKLTQLE QEIQRARAQG VYFGASSLLG GDQNVTVPIS SISSDAAVFD  240
MEYSRWLEEH HRIMCELRNA VQEHLPENEL RLFVDNCLSH LNEVMNLKGM IAKSDVFHLV  300
SGMWKTPAER CFMWMGGFRP SDIIKIVMSH IEPLSEQQLL GICGLQQSTH EAEEX
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027070298.10.0bZIP transcription factor TGA10-like isoform X2
RefseqXP_027176500.10.0bZIP transcription factor TGA10 isoform X3
SwissprotQ52MZ21e-180TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A068UPD71e-180A0A068UPD7_COFCA; Uncharacterized protein
STRINGXP_009611363.11e-178(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22792145