PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4179_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 436aa MW: 47435.2 Da PI: 5.4992

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4179_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	9.9e-12	338	383	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+e +P+ +k + +++L +Av+YIk+Lq cra_locus_4179_iso_4_len_2835_ver_3 338 SIAERVRRTRISERMRKLQEAVPNM----DKQTNTSDMLDLAVDYIKDLQ 383 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.297	332	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-15	335	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.01E-12	336	387	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	337	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-12	338	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-8	338	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MTGGLTRYRS APSSYFTSFL DATDNYVSSS VGGGGGGIGG MGGYVMDDLD QFLNRFMPNN 60 SGQRQEELNP GNNFSNSMSI QSHQTQFVGS MKQEQESMES QGQLNDFSSQ MMYQSQDSAE 120 IQAPAQRNQQ NSEASVDYSN RLLNSVNTNR FTPMKMATGG GNSNLIRYNS SPAGLFANIN 180 IENEYGAMRG MGNFGAGNNA NAEASFSSTS RFEGFSSGQS SSGLMPPISE MGTKGMGDQG 240 TSFEGQRNDG GGNYITGFPV SSWDDSGMLS ENLGKGLVGD NNNQQEXEGQ KDPAPTLLSR 300 HLSLPSTSVE FSAMETLMQD SVLCKIRAKR GCATHPRSIA ERVRRTRISE RMRKLQEAVP 360 NMDKQTNTSD MLDLAVDYIK DLQKQLKTLL DNGQSVLARM NESCGLKGQQ VGTCFFSAHL 420 RDIHKIVGIE DRKAKL

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MTGGLTRYRS APSSYFTSFL DATDNYVSSS VGGGGGGIGG MGGYVMDDLD QFLNRFMPNN  60
SGQRQEELNP GNNFSNSMSI QSHQTQFVGS MKQEQESMES QGQLNDFSSQ MMYQSQDSAE  120
IQAPAQRNQQ NSEASVDYSN RLLNSVNTNR FTPMKMATGG GNSNLIRYNS SPAGLFANIN  180
IENEYGAMRG MGNFGAGNNA NAEASFSSTS RFEGFSSGQS SSGLMPPISE MGTKGMGDQG  240
TSFEGQRNDG GGNYITGFPV SSWDDSGMLS ENLGKGLVGD NNNQQEXEGQ KDPAPTLLSR  300
HLSLPSTSVE FSAMETLMQD SVLCKIRAKR GCATHPRSIA ERVRRTRISE RMRKLQEAVP  360
NMDKQTNTSD MLDLAVDYIK DLQKQLKTLL DNGQSVLARM NESCGLKGQQ VGTCFFSAHL  420
RDIHKIVGIE DRKAKL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00646	PBM	Transfer from LOC_Os08g39630	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027077375.1	1e-149	transcription factor bHLH130-like isoform X3
Refseq	XP_027147994.1	1e-149	transcription factor bHLH130-like isoform X2
TrEMBL	A0A068VCJ1	1e-151	A0A068VCJ1_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400061284	1e-104	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4605	22	39