PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4179_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 409aa MW: 44717.1 Da PI: 5.4805

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4179_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	9e-12	311	356	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+e +P+ +k + +++L +Av+YIk+Lq cra_locus_4179_iso_2_len_1829_ver_3 311 SIAERVRRTRISERMRKLQEAVPNM----DKQTNTSDMLDLAVDYIKDLQ 356 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.297	305	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-15	308	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-11	309	360	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-13	310	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-12	311	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-9	311	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MTGGLTRYRS APSSYFTSFL DATDNYVSSS VGGGGGGIGG MGGYVMDDLD QFLNRFMPNN 60 SGQRQEELNP GNNFSNSMSI QSHQTQFVGS MKQEQESMES QGQLNDFSSQ MMYQSQDSAE 120 IQAPAQRNQQ NSEASVDYSN RLLNSVNTNR FTPMKMATGG GNSNLIRYNS SPAGLFANIN 180 IENXFEGFSS GQSSSGLMPP ISEMGTKGMG DQGTSFEGQR NDGGGNYITG FPVSSWDDSG 240 MLSENLGKGL VGDNNNQQEX EGQKDPAPTL LSRHLSLPST SVEFSAMETL MQDSVLCKIR 300 AKRGCATHPR SIAERVRRTR ISERMRKLQE AVPNMDKQTN TSDMLDLAVD YIKDLQKQLK 360 TLLDNGQSVL ARMNESCGLK GQQVGTCFFS AHLRDIHKIV GIEDRKAKL

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MTGGLTRYRS APSSYFTSFL DATDNYVSSS VGGGGGGIGG MGGYVMDDLD QFLNRFMPNN  60
SGQRQEELNP GNNFSNSMSI QSHQTQFVGS MKQEQESMES QGQLNDFSSQ MMYQSQDSAE  120
IQAPAQRNQQ NSEASVDYSN RLLNSVNTNR FTPMKMATGG GNSNLIRYNS SPAGLFANIN  180
IENXFEGFSS GQSSSGLMPP ISEMGTKGMG DQGTSFEGQR NDGGGNYITG FPVSSWDDSG  240
MLSENLGKGL VGDNNNQQEX EGQKDPAPTL LSRHLSLPST SVEFSAMETL MQDSVLCKIR  300
AKRGCATHPR SIAERVRRTR ISERMRKLQE AVPNMDKQTN TSDMLDLAVD YIKDLQKQLK  360
TLLDNGQSVL ARMNESCGLK GQQVGTCFFS AHLRDIHKIV GIEDRKAKL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00646	PBM	Transfer from LOC_Os08g39630	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027077375.1	1e-123	transcription factor bHLH130-like isoform X3
Refseq	XP_027147994.1	1e-123	transcription factor bHLH130-like isoform X2
TrEMBL	A0A068VCJ1	1e-125	A0A068VCJ1_COFCA; Uncharacterized protein