PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4179_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 398aa MW: 43310.4 Da PI: 5.2595 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 8.7e-12 | 338 | 383 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+e +P+ +k + +++L +Av+YIk+Lq cra_locus_4179_iso_1_len_1742_ver_3 338 SIAERVRRTRISERMRKLQEAVPNM----DKQTNTSDMLDLAVDYIKDLQ 383 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.297 | 332 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-14 | 335 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.34E-12 | 336 | 387 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.4E-13 | 337 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-11 | 338 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.0E-9 | 338 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MTGGLTRYRS APSSYFTSFL DATDNYVSSS VGGGGGGIGG MGGYVMDDLD QFLNRFMPNN 60 SGQRQEELNP GNNFSNSMSI QSHQTQFVGS MKQEQESMES QGQLNDFSSQ MMYQSQDSAE 120 IQAPAQRNQQ NSEASVDYSN RLLNSVNTNR FTPMKMATGG GNSNLIRYNS SPAGLFANIN 180 IENEYGAMRG MGNFGAGNNA NAEASFSSTS RFEGFSSGQS SSGLMPPISE MGTKGMGDQG 240 TSFEGQRNDG GGNYITGFPV SSWDDSGMLS ENLGKGLVGD NNNQQEXEGQ KDPAPTLLSR 300 HLSLPSTSVE FSAMETLMQD SVLCKIRAKR GCATHPRSIA ERVRRTRISE RMRKLQEAVP 360 NMDKQTNTSD MLDLAVDYIK DLQKQLKVSN SLKKFHSQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027077375.1 | 1e-146 | transcription factor bHLH130-like isoform X3 | ||||
Refseq | XP_027147994.1 | 1e-146 | transcription factor bHLH130-like isoform X2 | ||||
TrEMBL | A0A068VCJ1 | 1e-147 | A0A068VCJ1_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400061284 | 1e-105 | (Solanum tuberosum) |