PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_384_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 269aa    MW: 31129.9 Da    PI: 8.3539
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_384_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.3e-07107128223
                                        EETTTTEEESSHHHHHHHHHHT CS
                            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                        +C+ Cg sF+ + +L++H+++H
  cra_locus_384_iso_2_len_938_ver_3 107 VCHECGVSFKKPAYLRQHMQSH 128
                                        6*******************99 PP
2zf-C2H218.74.9e-06160184123
                                        EEET..TTTEEESSHHHHHHHHHHT CS
                            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                        ++Cp  dC+ s++rk++L+rH+  H
  cra_locus_384_iso_2_len_938_ver_3 160 FTCPvdDCHSSYRRKDHLTRHLLQH 184
                                        89*******************9887 PP
3zf-C2H218.36.5e-06189214123
                                        EEET..TTTEEESSHHHHHHHHHH.T CS
                            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                        ++Cp  +C+++F  + n++rH++  H
  cra_locus_384_iso_2_len_938_ver_3 189 FECPvdNCKRRFAFQGNMRRHMKEfH 214
                                        89*********************988 PP
4zf-C2H220.41.3e-06228252123
                                        EEET..TTTEEESSHHHHHHHHHHT CS
                            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                        y+C+   Cgk+F+  s L++H  +H
  cra_locus_384_iso_2_len_938_ver_3 228 YVCSeiGCGKVFKYASKLRKHEDSH 252
                                        99*******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.26E-760129No hitNo description
SMARTSM00355326284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-698129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0098106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-9157186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0059160184IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64160189IPR007087Zinc finger, C2H2
PROSITE patternPS000280162184IPR007087Zinc finger, C2H2
SuperFamilySSF576676.16E-7170216No hitNo description
Gene3DG3DSA:3.30.160.601.7E-6187211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.005189214IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221189219IPR007087Zinc finger, C2H2
PROSITE patternPS000280191214IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-7225252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.05E-5225252No hitNo description
SMARTSM003550.0015228252IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.053228252IPR007087Zinc finger, C2H2
PROSITE patternPS000280230252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
XXWELAALAE CECALLSTPG FLTKSGAPHR NSSTSPLSEI VSKVEMVEEK SKPVIFRDIR  60
RYYCEYCGIC RSKKALISAH ILSHHQDDLK QGEEDKRETH NGPKMNVCHE CGVSFKKPAY  120
LRQHMQSHSL EAVKHWIPHK ELQNARGQCX LECDQYQRPF TCPVDDCHSS YRRKDHLTRH  180
LLQHQGKLFE CPVDNCKRRF AFQGNMRRHM KEFHMEPSSS DEVSAKQYVC SEIGCGKVFK  240
YASKLRKHED SHGIILSILC WLVLQSFVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-1115726040137PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-1115726040137PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278827.18e-86PREDICTED: transcription factor IIIA
SwissprotQ84MZ42e-42TF3A_ARATH; Transcription factor IIIA
TrEMBLD7TQ663e-89D7TQ66_VITVI; Uncharacterized protein
STRINGVIT_08s0040g00240.t015e-90(Vitis vinifera)