PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3605_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | YABBY | ||||||||
Protein Properties | Length: 237aa MW: 26003.6 Da PI: 7.903 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 237.4 | 3.2e-73 | 31 | 195 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh...ldeslkee..lle 73 +eq+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn++ +a+ +h l++s+ + lle cra_locus_3605_iso_3_len_1328_ver_3 31 APTEQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPTAVPNHqlhLGHSFFSPqnLLE 104 679********************************************999777776651115555443333444 PP YABBY 74 elkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdi 147 el+++ +++ + + + ++t ++ +e+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdi cra_locus_3605_iso_3_len_1328_ver_3 105 ELRNSP-ATNLLMNQPNPNET-----LMPVRGVDELPKPPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDI 172 444332.33333333333333.....346678899***999********************************* PP YABBY 148 shreafsaaaknWahfPkihfgl 170 shreafsaaaknWahfP+ihfgl cra_locus_3605_iso_3_len_1328_ver_3 173 SHREAFSAAAKNWAHFPHIHFGL 195 *********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.6E-72 | 32 | 195 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.28E-8 | 138 | 188 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.2E-4 | 144 | 187 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MSSSSAFAPD HHHHHVQQHH LATASAAAAA APTEQLCYVH CNFCDTVLAV SVPCTSLFKT 60 VTVRCGHCTN LLSVNMRGLL LPTAVPNHQL HLGHSFFSPQ NLLEELRNSP ATNLLMNQPN 120 PNETLMPVRG VDELPKPPVA NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP DISHREAFSA 180 AAKNWAHFPH IHFGLMPDQP VKKSSVCQQQ QDNIGEDGGV LMKDGFLGPA NIGVSPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027106482.1 | 1e-137 | axial regulator YABBY 1-like | ||||
Swissprot | O22152 | 6e-87 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A068VGH3 | 1e-136 | A0A068VGH3_COFCA; Uncharacterized protein | ||||
STRING | XP_009793076.1 | 1e-123 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |