PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_33217_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 130aa MW: 15504.9 Da PI: 10.4616 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.9e-17 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l+ +v lG ++W++ a+ g++R++k+c++rw +yl cra_locus_33217_iso_1_len_389_ver_3 37 KGPWLEEEDERLIAVVSVLGQRRWDALAKASGLKRSGKSCRLRWMNYL 84 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 93 | 130 | 4 | 43 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 T+eE+ l+++++kq+G++ W++Iar+++ gRt++++k++ cra_locus_33217_iso_1_len_389_ver_3 93 ITAEEENLIIQLHKQWGNR-WSRIARRLP-GRTDNEIKNY 130 59*****************.*********.********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.031 | 32 | 88 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.79E-28 | 34 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-14 | 36 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-15 | 37 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-22 | 38 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.72E-9 | 39 | 84 | No hit | No description |
PROSITE profile | PS51294 | 18.143 | 89 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-7 | 89 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 92 | 130 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-13 | 93 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.65E-10 | 94 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
XLCHIVSCIR RIIPFPYKFI CKQIMEHQEL AMQELRKGPW LEEEDERLIA VVSVLGQRRW 60 DALAKASGLK RSGKSCRLRW MNYLRPNLKH GHITAEEENL IIQLHKQWGN RWSRIARRLP 120 GRTDNEIKNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-27 | 34 | 130 | 1 | 96 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-26 | 28 | 130 | 49 | 150 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-26 | 28 | 130 | 49 | 150 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 8e-27 | 28 | 130 | 18 | 119 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027069326.1 | 1e-60 | myb-related protein MYBAS1-like | ||||
Refseq | XP_027177478.1 | 5e-60 | transcription factor MYB27-like | ||||
Swissprot | Q9SCP1 | 4e-49 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A068V3D2 | 4e-57 | A0A068V3D2_COFCA; Uncharacterized protein | ||||
STRING | XP_010098805.1 | 3e-55 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Publications ? help Back to Top | |||
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