PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_28505_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family AP2
Protein Properties Length: 487aa    MW: 53856.3 Da    PI: 6.9049
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_28505_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17174223155
                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  cra_locus_28505_iso_3_len_2151_ver_3 174 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 223
                                           78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-9174223IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-16174232IPR016177DNA-binding domain
CDDcd000184.21E-11175233No hitNo description
Gene3DG3DSA:3.30.730.105.1E-17175231IPR001471AP2/ERF domain
SMARTSM003803.8E-32175237IPR001471AP2/ERF domain
PROSITE profilePS5103217.728175231IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-6266310IPR016177DNA-binding domain
CDDcd000183.21E-12266309No hitNo description
SMARTSM003804.8E-11267315IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MLDLNVDAVS VNSACDETFP EEADSVANSY ASSSSAVNAD EIPPTVLNIE ESNSSPAGST  60
NQATTTTLRF SILNNDKIDS GIIQIVDDQD DDDCDDQELL TTRQLFPVRK DDDSFSFAPA  120
AARPHHWLNL AVPEAVRGGV EMGIHNKASP AQAVAQQQQH PVKKSRRGPR SRSSQYRGVT  180
FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF HISDYEDDMQ  240
QMKNLTKEEF VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQLFGXK AYDKAAIQFN  300
GREAVTNFEP NSYGGEITRT SKDGGKGDNL DLNLWISPTS SAPQETDNSK ISDLHFATSE  360
LHDGKRLKVD SSVAASHGLA RTSKNSVIWN GMFAGFVPKN EERVRNMKAE AIPLPGFSNW  420
PWKLHHHHHQ QHNDVITSVP LCSSAASSGF SSVKTAYSAA AFLSPNTQNK VANPLDFRYP  480
PVTLNYN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089304.11e-168ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotB8AXC34e-90AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A068U9N81e-168A0A068U9N8_COFCA; Uncharacterized protein
STRINGXP_009772737.11e-139(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116