PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_284_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 157aa    MW: 17023.8 Da    PI: 10.3696
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_284_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.25.4e-1683142160
                                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                                        +ke kr +r+ +NR++A+  R+RKka++  Le kvkeLe++N +L ++l++l++e + l+
  cra_locus_284_iso_5_len_972_ver_3  83 DKENKRLKRLLRNRVSAQQARERKKAYLIDLEGKVKELETKNAELEERLSTLQNENQVLR 142
                                        5899***************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.9E-1483147IPR004827Basic-leucine zipper domain
PfamPF001702.9E-1484144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.31285148IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.6E-1787147No hitNo description
SuperFamilySSF579598.75E-1487145No hitNo description
CDDcd147041.38E-1688139No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MQEQATSSLA ASSLPSSSER SSSPAQNLEV KEGMESDDEI RRVPEIGGEG AGASASGRDG  60
GSVAGQVQPS NAGSRKRGRS PADKENKRLK RLLRNRVSAQ QARERKKAYL IDLEGKVKEL  120
ETKNAELEER LSTLQNENQV LRHILKNTTA GAQEGRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A8e-15108147342Transcription factor HY5
2oqq_B8e-15108147342Transcription factor HY5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081579.13e-83transcription factor HY5 isoform X1
SwissprotQ9SM509e-81HY5_SOLLC; Transcription factor HY5
TrEMBLA0A0V0HHN38e-80A0A0V0HHN3_SOLCH; Putative transcription factor HY5-like
STRINGSolyc08g061130.2.14e-79(Solanum lycopersicum)
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]