PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_284_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 166aa MW: 18356.5 Da PI: 10.0108

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_284_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.8	1.5e-15	83	141	1	59
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 +ke kr +r+ +NR++A+ R+RKka++ Le kvkeLe++N +L ++l++l++e + l cra_locus_284_iso_3_len_642_ver_3 83 DKENKRLKRLLRNRVSAQQARERKKAYLIDLEGKVKELETKNAELEERLSTLQNENQVL 141 5899***************************************************9866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-12	83	147	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.4E-14	84	142	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.024	85	142	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.6E-16	87	143	No hit	No description
SuperFamily	SSF57959	2.38E-13	87	143	No hit	No description
CDD	cd14704	4.72E-18	88	139	No hit	No description
PROSITE pattern	PS00036	0	90	105	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010017	Biological Process	red or far-red light signaling pathway
GO:0010099	Biological Process	regulation of photomorphogenesis
GO:0010114	Biological Process	response to red light
GO:0010218	Biological Process	response to far red light
GO:0010224	Biological Process	response to UV-B
GO:0031539	Biological Process	positive regulation of anthocyanin metabolic process
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0003690	Molecular Function	double-stranded DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MQEQATSSLA ASSLPSSSER SSSPAQNLEV KEGMESDDEI RRVPEIGGEG AGASASGRDG 60 GSVAGQVQPS NAGSRKRGRS PADKENKRLK RLLRNRVSAQ QARERKKAYL IDLEGKVKEL 120 ETKNAELEER LSTLQNENQV LRHVRHKNLL AFLFISHIEF LTFEPF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00117	ampDAP	Transfer from AT5G11260	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081579.1	2e-73	transcription factor HY5 isoform X1
Swissprot	Q9SM50	2e-70	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A0V0HHN3	1e-69	A0A0V0HHN3_SOLCH; Putative transcription factor HY5-like
TrEMBL	M1BV55	1e-69	M1BV55_SOLTU; Uncharacterized protein
TrEMBL	M1BV56	2e-69	M1BV56_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400053576	3e-70	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8037	24	30

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]