PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_284_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bZIP | ||||||||
Protein Properties | Length: 93aa MW: 10852.3 Da PI: 10.4699 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.7 | 1.7e-15 | 27 | 79 | 9 | 61 |
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 r+ +NR++A+ R+RKka++ Le kvkeLe++N +L ++l++l++e + l+ cra_locus_284_iso_2_len_652_ver_3 27 RLLRNRVSAQQARERKKAYLIDLEGKVKELETKNAELEERLSTLQNENQVLRH 79 899********************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.3E-10 | 23 | 83 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.243 | 26 | 84 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.2E-17 | 26 | 83 | No hit | No description |
SuperFamily | SSF57959 | 1.44E-13 | 26 | 81 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 27 | 41 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.8E-13 | 27 | 80 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14704 | 6.67E-16 | 27 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003690 | Molecular Function | double-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
XRIIFSMLLV FHERQFGNIM ICVGLERLLR NRVSAQQARE RKKAYLIDLE GKVKELETKN 60 AELEERLSTL QNENQVLRHI LKNTTAGAQE GRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2oqq_A | 5e-15 | 44 | 83 | 3 | 42 | Transcription factor HY5 |
2oqq_B | 5e-15 | 44 | 83 | 3 | 42 | Transcription factor HY5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00117 | ampDAP | Transfer from AT5G11260 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019173932.1 | 8e-38 | PREDICTED: transcription factor HY5 | ||||
Refseq | XP_019173933.1 | 8e-38 | PREDICTED: transcription factor HY5 | ||||
Refseq | XP_019173934.1 | 8e-38 | PREDICTED: transcription factor HY5 | ||||
Swissprot | Q9SM50 | 1e-38 | HY5_SOLLC; Transcription factor HY5 | ||||
TrEMBL | A0A0V0HHN3 | 2e-36 | A0A0V0HHN3_SOLCH; Putative transcription factor HY5-like | ||||
TrEMBL | A0A1U7VJT3 | 2e-36 | A0A1U7VJT3_NICSY; transcription factor HY5 isoform X2 | ||||
TrEMBL | A0A1U8E2N7 | 2e-36 | A0A1U8E2N7_CAPAN; Transcription factor HY5 | ||||
TrEMBL | A0A2G2W566 | 2e-36 | A0A2G2W566_CAPBA; Uncharacterized protein | ||||
TrEMBL | A0A2G2ZY99 | 2e-36 | A0A2G2ZY99_CAPAN; transcription factor HY5 | ||||
TrEMBL | A0A2G3CVK7 | 2e-36 | A0A2G3CVK7_CAPCH; Transcription factor HY5 | ||||
STRING | Solyc08g061130.2.1 | 4e-37 | (Solanum lycopersicum) |
Publications ? help Back to Top | |||
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