PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2671_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 360aa MW: 39904.5 Da PI: 7.2636 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.3 | 3e-12 | 92 | 136 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky cra_locus_2671_iso_2_len_1401_ver_3 92 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 136 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.59E-16 | 86 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.18 | 87 | 141 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-5 | 90 | 142 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-18 | 90 | 139 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.5E-10 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-10 | 92 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-7 | 94 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
RPGDAVVHRT DRLDNANISS TYCXQYMVSL NPNPPEDFYL DPMGMALPNL GSFSNPPATA 60 TSATTSTSTA PSLPSDDPTK KVRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF 120 VGSKTVIQIR SHAQKYFLKV QKGGTNEHLP PPRPKRKAAH PYPQKASKSA SALPQATPFH 180 ESTSLPDHGF LQRHDSSIVL KNPVTGVLSW NENSAGPVNL HPAEKGDIRP ASLPIANNNC 240 CSSNESTPHS KTRPTGDMTD QGNHGPQRVL PDFAQVYGFI GSVFDPNVTG HLQKLKKMDP 300 IDVETVLLLM RNLSINLTSP DFEDHRRLLS SYEIELGKED GNDPTNIIHD QRVDVSHFVT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027110214.1 | 1e-173 | protein REVEILLE 6-like | ||||
Swissprot | Q8H0W3 | 1e-108 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A1DR87 | 0.0 | A1DR87_CATRO; MYB transcription factor (Fragment) | ||||
STRING | XP_009802901.1 | 1e-142 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA998 | 24 | 78 |
Publications ? help Back to Top | |||
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