PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_25118_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 344aa    MW: 36921.4 Da    PI: 7.3859
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_25118_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.11.6e-15254289134
                                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                                           C +Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg
  cra_locus_25118_iso_3_len_1257_ver_3 254 CKHCGISSksTPMMRRGPAGPRTLCNACGLKWANKG 289
                                           *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.624117152IPR010399Tify domain
SMARTSM009791.5E-10117152IPR010399Tify domain
PfamPF062002.5E-12121151IPR010399Tify domain
PROSITE profilePS5101713.225185227IPR010402CCT domain
PfamPF062033.2E-16185227IPR010402CCT domain
PROSITE profilePS501148.946248305IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-10248301IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-11249300No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14252295IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.06E-14253303No hitNo description
PROSITE patternPS003440254281IPR000679Zinc finger, GATA-type
PfamPF003203.2E-13254289IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
XVRKKQKAMN NVQHQQQQRQ TGSHGHHHHH LDDEEEDDVA GSGGAGGGAE ESVDNPHPHH  60
HSHSHSQIQY DANPHSHALH NGGDSATAMD SAVNGVEGVG QHALYVPGSE IVPAPAGGGG  120
ADQLTLSFQG EVYVFDSVSP EKVQAVLLLL GGYEVPAGVP SVGGMPAHNH RNLGEFPGRS  180
SQPQRAASLN RFREKRKERC FDKKIRYTVR KEVALRMQRK KGQFTSSKSI SDEVGSSSSD  240
YNTMAGQEEQ ETTCKHCGIS SKSTPMMRRG PAGPRTLCNA CGLKWANKGI LRDLTKVPPT  300
GIQDTILRGS EQSNGEVNHS EAVTAAVDVK TLSNGDNSAL TAER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027154412.11e-165GATA transcription factor 28-like
SwissprotQ8GXL76e-85GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A068TN421e-151A0A068TN42_COFCA; Uncharacterized protein
STRINGXP_009609389.11e-132(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]