PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_23780_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HSF | ||||||||
Protein Properties | Length: 246aa MW: 28287 Da PI: 8.6057 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.7 | 1e-34 | 23 | 114 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks 74 Fl k+y ++ed++ +e+isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+ +++ cra_locus_23780_iso_1_len_1203_ver_3 23 FLLKTYMLVEDPASDEVISWNDDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKIATSR----- 90 9****************************************************************999..... PP XTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 kekiweFkhksFkkgkkellekikrkks 102 weF+++ F+kg k++l++i+r+k cra_locus_23780_iso_1_len_1203_ver_3 91 ----WEFSNEMFRKGAKDQLCEIRRRKA 114 ....*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.6E-36 | 16 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.53E-33 | 18 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.9E-53 | 19 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.8E-31 | 23 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-18 | 23 | 46 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-18 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 62 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-18 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDNCEISERS LLEYVRKSSP PPFLLKTYML VEDPASDEVI SWNDDGTAFV VWQPAEFARD 60 LLPTLFKHSN FSSFVRQLNT YGFRKIATSR WEFSNEMFRK GAKDQLCEIR RRKAWNNNNK 120 SQTKKDQSKL AAAIAAELPL KEAEEDQRSS STSSSSDEYS ILVHENKRLK KENGFLSSEL 180 STMKNKCKEL LELVAAHSSS EKEGNNLEGK PKLFGVRLEV EAEIERKRKM AEIRQNATLF 240 LFQSCK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 4e-22 | 23 | 112 | 4 | 104 | Putative transcription factor |
5d5x_B | 4e-22 | 23 | 112 | 4 | 104 | Putative transcription factor |
5d5x_E | 4e-22 | 23 | 112 | 4 | 104 | Putative transcription factor |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027066484.1 | 1e-111 | heat stress transcription factor B-3-like | ||||
Refseq | XP_027066561.1 | 1e-111 | heat stress transcription factor B-3-like | ||||
Swissprot | O22230 | 9e-70 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A068V0E2 | 1e-109 | A0A068V0E2_COFCA; Uncharacterized protein | ||||
STRING | XP_008244246.1 | 1e-108 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4423 | 22 | 41 |