PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_18478_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 274aa MW: 31201.8 Da PI: 9.0361

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18478_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23	2.1e-07	123	145	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H cra_locus_18478_iso_1_len_1176_ver_3 123 HYCQVCGKGFKRDANLRMHMRAH 145 68*******************99 PP
2	zf-C2H2	11	0.0014	209	232	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+L++H + + cra_locus_18478_iso_1_len_1176_ver_3 209 YVCKRCNrKKFSVLSDLRTHEKHC 232 9*******************9876 PP
3	zf-C2H2	10.7	0.0017	241	256	6	21
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L+ H + cra_locus_18478_iso_1_len_1176_ver_3 241 CGTTFSRKDKLMGHVS 256 *************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.8E-6	121	148	No hit	No description
SMART	SM00355	0.0034	123	145	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.653	123	150	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.7E-7	123	175	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	0.0015	124	143	No hit	No description
PROSITE pattern	PS00028	0	125	145	IPR007087	Zinc finger, C2H2
SMART	SM00355	77	171	204	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	22	209	231	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MAIAIASMET LIQEIIVTSS SMMFTCQQLA LGVGSTSTGN NQGAATGELL PQQDQWYADH 60 DHSYNINTCY NTNIEAIKRD XIVVEKVEHI EEGLLLEQVH ENVSNNYDIV ELDAANLLAK 120 YTHYCQVCGK GFKRDANLRM HMRAHGDEYK SSASLINPLK KKIIILARKL YSCPQEGCRW 180 NKKHEKFQPL KSMICVKNHY KRSHCPKMYV CKRCNRKKFS VLSDLRTHEK HCGDVKWQCS 240 CGTTFSRKDK LMGHVSLFLG HSPAITSLAK MRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:23935008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00522	DAP	Transfer from AT5G22890	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027173482.1	1e-124	protein SENSITIVE TO PROTON RHIZOTOXICITY 2
Swissprot	Q0WT24	1e-101	STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBL	A0A068UFQ0	1e-124	A0A068UFQ0_COFCA; Uncharacterized protein
STRING	XP_009601613.1	1e-119	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11265	22	25